| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4190073 = | 396 (1.120) | 57 (0.200) | 16/90 | NT | 15.3% | intergenic (+51/‑136) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
| ? | CP009273 | 4190110 = | 311 (1.100) | intergenic (+88/‑99) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit | |||||
Only 100 of 194 total aligned reads displayed.
ATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4190148‑4190073‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCT > CP009273/4190110‑4190175 ATAGCACTCTCCTGCATACACGCACCGATAGCCCCTTTTTTTCGCCCCCCAAATGTAGCCCAGACGGG > 1:28879230/1‑68ATAGCACTCTCCTGCATACACGCACCGATAGCCCCTTTTTTTCGCCCCCCAAATGTAGCCCAGACGGG > 1:15944407/1‑68ATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGG > 1:2439375/1‑68ATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGG > 1:8778061/1‑68ATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGG < 1:11320870/68‑1ATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGG < 1:8628168/68‑1ATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGG < 1:5870925/68‑1 AGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGCCCAGACGGGGG < 1:4410361/68‑1 AGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGG < 1:3199998/68‑1 AGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGG < 1:4925753/68‑1 AGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGG < 1:5974054/68‑1 CACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGC < 1:25533192/68‑1 ACTCTCCTGCATACCCGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGC < 1:10510104/67‑1 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATTTACCCAAGCCGGGGGGCc > 1:11893130/1‑67 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG > 1:5427100/1‑68 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG > 1:6622607/1‑68 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG > 1:4491358/1‑68 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG > 1:6738938/1‑68 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG > 1:16119022/1‑68 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG > 1:16474455/1‑68 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG > 1:8055842/1‑68 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG > 1:28312848/1‑68 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG > 1:10455242/1‑68 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG > 1:23282718/1‑68 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG > 1:20242769/1‑68 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGC < 1:25852691/67‑1 CTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGA < 1:1232760/68‑1 TCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGTCGGGGGGCGAA > 1:9743627/1‑68 TCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAA < 1:20437975/68‑1 TCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAA < 1:28999557/68‑1 TCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAA > 1:21021604/1‑68 TCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAA > 1:21530507/1‑68 TCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAA > 1:25145893/1‑68 TCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAA < 1:22699371/68‑1 TCTCCTCCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAA < 1:11025698/68‑1 CTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAA > 1:10857047/1‑68 CTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAA > 1:16953658/1‑68 CTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAA > 1:8206886/1‑68 TCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGG < 1:23443232/61‑1 TACACGGACCGATAGCCACTTTTTATCCCCCGCCAAATGTCGACCAGACGGGGGGCGAAAAAAAGTGG < 1:1824529/68‑1 TACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGG < 1:20007178/68‑1 CACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCT < 1:15361761/68‑1 CACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCT < 1:26847335/68‑1 CACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCT < 1:17323443/68‑1 ccCACCTAAAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTAT < 1:17859100/66‑1 ACCGATAGCCACTTTTTTTCGCCCCCCAAATGTCGACCAGCCGGGGGGCGAAAAAAAGTGGCTATCG < 1:7886749/67‑1 cctATAGCCACTTTTTTTCGCCCCCCAAATGTACCCCAGACGGGGGGCGAAAAAAAGTGGCTATCGGT < 1:13485614/65‑1 cctATACCCACTTTTTTTCGCCCCCCAAATGTACCCCACACGGGGGGCTAAAAAAAGTGGCTATCGGT < 1:3012744/65‑1 CCGATAGCCACTTTTTTTCGCCCCCCAAATGTCGACCAGACGGGGGGCGAAAAAAAGTGGCAATCGGT < 1:5098585/68‑1 CCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGT < 1:14633538/68‑1 CCGATAGCCACTTTTTTTCCCCCCCCAAATGTAGACCCGACGGGGGGCGAAAAAAAGTGGCTATCGGT < 1:12166775/68‑1 aAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGCGGCGAAAAAAAGTGGCTATCGGTGCG < 1:25200279/66‑1 TAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGT < 1:6858604/68‑1 TAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGT < 1:9583630/68‑1 TAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCG < 1:5670982/67‑1 TAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCG < 1:15853021/67‑1 TAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCG < 1:27096576/67‑1 TAGCCACTTTTTTTCGCCCCCCAAATGTACACCACACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGT < 1:21270354/68‑1 CACTTTTTTTCGCCCCCCAAATGTCGACCAGCCGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAT < 1:2307817/68‑1 CACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAT < 1:22753931/68‑1 CACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAT < 1:6973958/68‑1 CACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGT < 1:8876717/66‑1 CACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGT < 1:3841478/66‑1 CACTTTTTTTCGCCCCCCAAAAGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGT < 1:28696282/66‑1 CACTTTTTATCGCCCCCCAAATGCAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGT < 1:7405288/66‑1 CTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGC < 1:22336689/68‑1 TTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGA < 1:16741000/68‑1 TTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGA < 1:11516966/68‑1 TTCGCCCCCCAAATGGACACCACACGGGCGGCGAAAAAAAGCGGCTATCGGTGCGTGTATGCAGGAGA < 1:6591743/68‑1 CGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGT < 1:19306643/68‑1 CCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCT < 1:22635725/68‑1 CCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTAT < 1:23033243/68‑1 GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCCTTTCCGTCGC > 1:21815714/1‑66 GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC > 1:16653022/1‑66 GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC > 1:11718187/1‑66 GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC > 1:15635014/1‑66 GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC > 1:26323251/1‑66 GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC > 1:3428236/1‑66 GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC > 1:3989728/1‑66 GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC > 1:4126025/1‑66 GGGGGCGAAAAAAAGTGGCTATCAGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC > 1:27463147/1‑66 GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC < 1:14068682/67‑1 GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC > 1:19654901/1‑67 GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC < 1:9288976/67‑1 GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC > 1:22530991/1‑67 GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC > 1:8668761/1‑67 GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC > 1:16981457/1‑67 GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC < 1:1532092/67‑1 GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC > 1:26742053/1‑67 GGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACT < 1:2086411/67‑1 CGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGA < 1:5209348/67‑1 GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATG < 1:25736304/68‑1 GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT < 1:7643711/67‑1 GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT < 1:25213314/67‑1 GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT < 1:27061180/67‑1 GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT < 1:12739057/67‑1 GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT < 1:29063587/67‑1 GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT < 1:9390763/67‑1 GAAAAAAAGTGGCTATCGGTGCGTGTACGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT < 1:25908634/67‑1 AAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGC < 1:23864540/67‑1 ATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4190148‑4190073‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCT > CP009273/4190110‑4190175 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |