| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4190073 = | 396 (1.120) | 57 (0.200) | 16/90 | NT | 15.3% | intergenic (+51/‑136) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
| ? | CP009273 | 4190110 = | 311 (1.100) | intergenic (+88/‑99) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit | |||||
Only 100 of 559 total aligned reads displayed.
TAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAG > CP009273/4190006‑4190140 | taATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCt > 1:22173694/1‑68 (MQ=255) tttttCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTc > 1:27850127/1‑68 (MQ=255) tttttCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTc > 1:315269/1‑68 (MQ=255) atcgagtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTc < 1:7643711‑M1/4‑1 (MQ=255) atcgagtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTc < 1:27061180‑M1/4‑1 (MQ=255) atcgagtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTc < 1:11883338‑M1/4‑1 (MQ=255) atcgagtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTc < 1:25562110‑M1/4‑1 (MQ=255) atcgagtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTc < 1:12739057‑M1/4‑1 (MQ=255) atcgagtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttATTc < 1:80193‑M1/4‑1 (MQ=255) ttCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGcc < 1:20351444/68‑1 (MQ=255) ttCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGcc < 1:17038704/68‑1 (MQ=255) ttCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGcc < 1:10981761/68‑1 (MQ=255) gtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTtcgcacc < 1:7102470‑M1/9‑4 (MQ=255) gtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCGcccc < 1:9288976‑M1/9‑1 (MQ=255) gtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCGcccc > 1:8668761‑M1/59‑67 (MQ=255) gtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCGcccc > 1:232973‑M1/59‑67 (MQ=255) gtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCGcccc > 1:22530991‑M1/59‑67 (MQ=255) gtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCGcccc > 1:26742053‑M1/59‑67 (MQ=255) gCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGcccccc > 1:26540885/1‑68 (MQ=255) gcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCGccccc > 1:16653022‑M1/57‑66 (MQ=255) aaTAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCg < 1:26224633/67‑1 (MQ=255) aaTAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGt < 1:10851820/68‑1 (MQ=255) aGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTgg < 1:16900828/68‑1 (MQ=255) gACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTgg > 1:579177/1‑67 (MQ=255) aCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTgg > 1:1652681/1‑66 (MQ=255) aCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTgg > 1:252126/1‑66 (MQ=255) aCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCACCCGTCTgg > 1:27654046/1‑66 (MQ=255) ccAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGt < 1:23616390/66‑1 (MQ=255) ccAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGt < 1:20200586/66‑1 (MQ=255) ccAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGt < 1:10010202/66‑1 (MQ=255) ccAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCt < 1:13555747/68‑1 (MQ=255) ccAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCt > 1:15924079/1‑68 (MQ=255) ccAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCt > 1:4259531/1‑68 (MQ=255) aaaCGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACa < 1:17757639/66‑1 (MQ=255) aaaCGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACa < 1:2836382/66‑1 (MQ=255) aaaCGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACAtt < 1:28992132/68‑1 (MQ=255) aaaCGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACAtt > 1:14426848/1‑68 (MQ=255) aaaCGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACAtt > 1:26083981/1‑68 (MQ=255) aaaCGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACAtt > 1:27452554/1‑68 (MQ=255) aaaCGTGATTTAACGCCTGATTTGTCGTACCTGGAGGCTTCCCTTTCGCCCCCCGTCTGGTCTACAtt < 1:23940194/68‑1 (MQ=255) aCGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTg < 1:19500633/68‑1 (MQ=255) aCGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTg > 1:16002801/1‑68 (MQ=255) atagcactctcctgcatacacgcaccgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTggg < 1:3937107‑M1/29‑1 (MQ=255) actctcctgcatacacgcaccgatagccacttttTTTCGCCCCCCGTCTGGTGGACATTTGGGGGGCg < 1:23065991‑M1/34‑1 (MQ=255) tAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGa < 1:25751420/68‑1 (MQ=255) aCGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGaaa > 1:14133612/1‑68 (MQ=255) gCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGaaaaa > 1:5455087/1‑68 (MQ=255) ccTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGaaaaaa > 1:12364605/1‑68 (MQ=255) ccTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGaaaaaa > 1:2269410/1‑68 (MQ=255) atacacgcaccgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTg < 1:22753931‑M1/44‑1 (MQ=255) tttGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTgg < 1:2288246/68‑1 (MQ=255) tGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCt < 1:29226808/68‑1 (MQ=255) acgcaccgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTa < 1:9583630‑M1/48‑1 (MQ=255) cgcaccgatagccacttttTTTCGCCCCCCGTGTGGTCTACAGTTGGGGGGCGTAAAAAAGTggcga < 1:9480417‑M1/48‑3 (MQ=255) cGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATc > 1:18084952/1‑68 (MQ=255) accgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCgg < 1:14633538‑M1/52‑1 (MQ=255) accgatagccacttttTTTCGCCCCCCGTCGGGTCTACATTTGGGGGGGGAAAAAAAGTGGCTATCgg < 1:12166775‑M1/52‑1 (MQ=255) aCCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGt < 1:16345431/68‑1 (MQ=255) aCCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGt < 1:18560153/68‑1 (MQ=255) cgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGGTTTCGGt < 1:5216074‑M1/53‑1 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGc > 1:19268904/1‑68 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGc > 1:18871909/1‑68 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGc > 1:11245124/1‑68 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:13125042/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:3823338/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:6287855/68‑1 (MQ=255) tGGAGGCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:1056669/68‑1 (MQ=255) ggAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgt < 1:16806097/68‑1 (MQ=255) agccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtg < 1:4834004‑M1/58‑1 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:27187322/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:11585492/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:8811650/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:13799440/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:8331534/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:15247916/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:15684999/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:21304811/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:19631643/1‑68 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt < 1:1739098/67‑1 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt < 1:4524236/67‑1 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCGACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTa > 1:9050942/1‑68 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGGCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgggt < 1:3367135/67‑1 (MQ=255) ccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTa < 1:20007178‑M1/60‑1 (MQ=255) tCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt > 1:28137316/1‑68 (MQ=255) tCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt > 1:13433586/1‑68 (MQ=255) tCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt > 1:24355352/1‑68 (MQ=255) cTTCGCTTTGGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:28509993/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:9922022/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:28837466/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:24698636/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:21736089/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:1537681/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:7359267/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:6824536/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:20779219/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:5693360/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:18257026/67‑1 (MQ=255) cccTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAg > 1:11509551/1‑68 (MQ=255) ccTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAgg < 1:6695973/68‑1 (MQ=255) ccTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAgg < 1:6499542/68‑1 (MQ=255) | TAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAG > CP009273/4190006‑4190140 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |