BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4538708	361 (1.020)	12 (0.040)	5/94	NT	4.0%	coding (84/903 nt)	fimH	minor component of type 1 fimbriae
*	?	CP009273	= 4538723	277 (0.930)	12 (0.040)	5/94	NT	4.0%	coding (99/903 nt)	fimH	minor component of type 1 fimbriae
Rejected: Frequency below/above cutoff threshold.

Only 100 of 159 total aligned reads displayed.

GTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/4538634‑4538708

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgccaatAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC  <  CP009273/4538723‑4538657

GTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAA                                                                             >  1:16924023/1‑67

GTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAA                                                                             >  1:18095605/1‑67

GTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAA                                                                             >  1:19718753/1‑67

GTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAA                                                                             >  1:18641971/1‑67

 TTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACC                                                                           >  1:20431777/1‑68

  TATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCG                                                                          <  1:15042686/68‑1

  TATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACC                                                                           >  1:1222936/1‑67

  TATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACC                                                                           >  1:1615010/1‑67

  TATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACC                                                                           >  1:27715037/1‑67

  TATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACC                                                                           >  1:17617762/1‑67

  TATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAAC                                                                            <  1:24619406/66‑1

  TATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAAC                                                                            <  1:18570249/66‑1

   ATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGC                                                                         <  1:15817342/68‑1

   ATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGC                                                                         <  1:23693760/68‑1

     TACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCA                                                                       <  1:9591054/68‑1

     TACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCA                                                                       <  1:19911083/68‑1

     TACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCA                                                                       <  1:1513387/68‑1

     TACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCA                                                                       <  1:11305987/68‑1

     TACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCA                                                                       <  1:4732342/68‑1

      gCCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA                                                                      >  1:20972859/2‑68

      ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA                                                                      >  1:14604648/1‑68

      ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA                                                                      >  1:15558562/1‑68

      ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA                                                                      >  1:23805987/1‑68

      ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA                                                                      >  1:2414579/1‑68

      ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA                                                                      >  1:19224258/1‑68

      ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA                                                                      >  1:27076671/1‑68

      ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA                                                                      >  1:5228059/1‑68

      ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGACATTCGCCTGTAAAACCGCCAA                                                                      >  1:20143569/1‑68

       CCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT                                                                     >  1:21370922/1‑68

       CCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT                                                                     >  1:2213442/1‑68

       CCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT                                                                     <  1:15481632/68‑1

                                              CCTGGTCATTCGCCTGTAAAACCGGCAATAGGGATAGCGGTACCATTGGCGGGTTTACAGGCGAATG                               >  1:27153172/1‑67

                                              CCTGGTCATTCGCCTGTAAAACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGGATG                               >  1:1044058/1‑67

                                              CCTGGTCATTCGCCTGTAAAACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATG                               >  1:11010156/1‑67

                                              CCTGGTCATTCGCCTGTAAAACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATG                               >  1:21609890/1‑67

                                                  GTCATTCGCCTGTAAAACCGCCTAGAGGGATTGCGGTACCATTGGCGGTTTTTCAGGCGAATGACCAG                          >  1:649600/1‑68

                                                  GTCATTCGCCTGTAAAACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAG                          >  1:24217577/1‑68

                                                           CTGTAAAACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCAGTTACa                 >  1:9050028/1‑67

                                                                 AACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCA            >  1:8498851/1‑67

                                                                 AACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCA            >  1:16866846/1‑67

                                                                  ACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGC          <  1:6967045/68‑1

                                                                  ACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGC          <  1:23916255/68‑1

                                                                  ACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGC          <  1:12184879/68‑1

                                                                  ACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGC          <  1:1005202/68‑1

                                                                  ACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGC          <  1:2742813/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:10067828/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:24973136/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:26062806/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:2712289/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:8390293/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:2749913/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:27886807/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:3932010/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:5025245/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:8056897/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:7571498/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:5717089/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:5897143/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:6294109/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:16723101/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:19889700/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:23387972/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:21360023/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:12327016/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:23373440/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:17228273/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:16889158/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:16818587/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:13564391/68‑1

                                                                     GCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA       <  1:14591193/68‑1

                                                                      CCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA       >  1:6123295/1‑67

                                                                      CCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA       >  1:17609281/1‑67

                                                                      CCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA       >  1:29250673/1‑67

                                                                      CCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA       >  1:3360251/1‑67

                                                                       CAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCAT      <  1:15732492/67‑1

                                                                       CAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCAT      <  1:13661154/67‑1

                                                                       CAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCAT      <  1:10856524/67‑1

                                                                       CAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCAT      <  1:12798745/67‑1

                                                                        AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA    <  1:7515924/68‑1

                                                                        AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA    <  1:19584523/68‑1

                                                                        AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA    <  1:4363378/68‑1

                                                                        AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA    >  1:19114124/1‑68

                                                                        AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA    <  1:9168742/68‑1

                                                                        AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA    <  1:17361192/68‑1

                                                                        AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA    <  1:4965980/68‑1

                                                                        AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA    <  1:4243179/68‑1

                                                                        AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA    <  1:29181580/68‑1

                                                                        AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA    <  1:21654425/68‑1

                                                                        AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA    <  1:22436767/68‑1

                                                                        AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA    <  1:26775553/68‑1

                                                                         ATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA    >  1:19140710/1‑67

                                                                         ATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:26725226/62‑1

                                                                          TAGGGATAGCGGTACCCTTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC  <  1:7080956/68‑1

                                                                          TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC  >  1:14270045/1‑68

                                                                          TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC  <  1:10633796/68‑1

                                                                          TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC  <  1:465309/68‑1

                                                                          TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC  >  1:3261999/1‑68

                                                                          TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC  >  1:27321958/1‑68

                                                                          TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC  <  1:23064683/68‑1

                                                                          TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC  <  1:12475158/68‑1

GTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/4538634‑4538708

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgccaatAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC  <  CP009273/4538723‑4538657

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.