| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4620353 | 270 (0.760) | 5 (0.020) | 3/94 | NT | 1.9% | intergenic (‑14/‑197) | yjjK/slt | putative transporter subunit of ABC superfamily: ATP‑binding component/lytic murein transglycosylase, soluble |
| ? | CP009273 | = 4620382 | 287 (0.970) | intergenic (‑43/‑168) | yjjK/slt | putative transporter subunit of ABC superfamily: ATP‑binding component/lytic murein transglycosylase, soluble | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 160 total aligned reads displayed.
ATATGACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4620278‑4620353‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acttcgcctTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATACCATG < CP009273/4620382‑4620316 ATATGACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGA < 1:19100842/68‑1 GACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTC > 1:26403742/1‑68 GACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTC < 1:22034809/68‑1 ACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTC > 1:931358/1‑67 ACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTC > 1:2077830/1‑67 cggTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGC < 1:28065282/65‑1 CGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGC < 1:5002482/68‑1 CGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGC < 1:6585206/68‑1 CGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGC < 1:26655792/68‑1 CGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCG < 1:296179/67‑1 CGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCG < 1:18728902/67‑1 CGTTTAGGCGGAACAAATTTGCCGACACGATGCATGGTATAAAAGAATTGAGCCACTTTGGACTTCGC < 1:24774510/68‑1 tTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:28003903/67‑1 ggTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:14901931/66‑1 GTTTCGGCGTAAGAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:26524206/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATTCATTTTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:17547727/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATTCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:25295514/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:3267240/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:22270553/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:10059414/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:20527596/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:23769524/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:247578/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:18232979/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:17922775/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:24943004/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:4791199/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:5629210/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:13639115/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:14506526/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:8918836/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:15239954/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:9578994/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:10242275/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:16723265/68‑1 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCG > 1:10462905/1‑66 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCG > 1:1932899/1‑66 GTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCG > 1:19963700/1‑66 ttgCGGCTGAACAACTTTGCCGACACGATGCTTGGTATAAACGAATTGAGCCACGTTGGACTTCGCC < 1:18449355/64‑1 CATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTTTGAAAACTCATTATCACGATAAACATAGA > 1:12101639/1‑68 GTATAAACGAATTGAGCCACGTTGGACTTCGCCGTTGTAACCTCAGTTTCACGATAAACATAGCGGCG > 1:27023954/1‑68 CGAATTGAGCCACGTTGGACTTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCA > 1:16237992/1‑68 CGAATTGAGCCACGTTGGACTTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCA > 1:12516526/1‑68 ACTTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTT > 1:9732330/1‑68 ACTTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTT > 1:10067651/1‑68 ACTTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTT > 1:12778414/1‑68 ACTTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTT > 1:13804028/1‑68 ACTTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTT > 1:20159033/1‑68 ACTTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTT > 1:16359748/1‑68 ACTTCGCCTTTGAAAACTCATCATCACGATAAACATAGAGGGGAAGTCCAACGTGGCTCAAATCGTTT > 1:13114998/1‑68 CTTCGCCTTTGAACACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCACTTCGTTaa > 1:28674762/1‑66 CTTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTA > 1:13329210/1‑68 CTTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTA > 1:26932446/1‑68 CTTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTA > 1:1146169/1‑68 CTTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTA > 1:6458271/1‑68 CTTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTA > 1:16200381/1‑68 TTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTGCAACGTGGCTCAATTCGTTTAT < 1:19672413/68‑1 TTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTAT < 1:8604285/68‑1 TTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTAT < 1:22937705/68‑1 TTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTAT < 1:1471246/68‑1 TTCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTAT < 1:22457424/68‑1 TCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATA < 1:23480147/68‑1 TCGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTAT > 1:15540370/1‑67 CGCCTTTGAAAACTCCTTATCACGATAAACATAGAGGCGAAGTCCCACGTGGCTCAATTCGTTTATAC < 1:5092280/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCTAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:24989719/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:3698472/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:25852008/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:170655/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:4850092/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:16457216/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:621614/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:7513748/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:7525435/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:8603859/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:11871967/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:10194983/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:9783702/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:3306742/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:2608208/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:17364735/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:17715352/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:17897310/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:28174048/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:24222135/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:21986834/68‑1 CGCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:27566864/68‑1 CGCCTTCGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATAC < 1:28576331/68‑1 GCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATACC < 1:16460251/68‑1 GCCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATACC < 1:23791684/68‑1 CCTTTGATAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATACCA > 1:2257893/1‑68 CCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATACCA > 1:4114359/1‑68 CCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATACCA > 1:928989/1‑68 CCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATACCA > 1:21595028/1‑68 CCTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATACCA > 1:4371819/1‑68 CTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATACCA < 1:6926259/67‑1 CTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATACCA < 1:10697877/67‑1 CTTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATACCA < 1:15987047/67‑1 TTTGAAAAGTCATTATCACTATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATACCATG < 1:27682210/68‑1 TTTGAAAACTCATTCTCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATACCATG < 1:12608601/68‑1 TTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATACCAT > 1:6724523/1‑67 ATATGACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4620278‑4620353‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acttcgcctTTGAAAACTCATTATCACGATAAACATAGAGGCGAAGTCCAACGTGGCTCAATTCGTTTATACCATG < CP009273/4620382‑4620316 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |