| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4620353 | 270 (0.760) | 5 (0.020) | 3/94 | NT | 1.9% | intergenic (‑14/‑197) | yjjK/slt | putative transporter subunit of ABC superfamily: ATP‑binding component/lytic murein transglycosylase, soluble |
| ? | CP009273 | = 4620382 | 287 (0.970) | intergenic (‑43/‑168) | yjjK/slt | putative transporter subunit of ABC superfamily: ATP‑binding component/lytic murein transglycosylase, soluble | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 522 total aligned reads displayed.
TTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTAATCCCAGCC > CP009273/4620287‑4620420 | ttgggcggAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCctc < 1:5443757/65‑1 (MQ=255)ttCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCctc < 1:14749062/68‑1 (MQ=255) gcggAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATg > 1:12651648/1‑68 (MQ=255) cggAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATg < 1:6413435/67‑1 (MQ=255) cggAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATg < 1:21495638/67‑1 (MQ=255) cggAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATg < 1:18846202/67‑1 (MQ=255) cggAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATg < 1:13104450/67‑1 (MQ=255) ggAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGtt > 1:17707526/1‑68 (MQ=255) caacTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATc < 1:13373121/68‑1 (MQ=255) acgttGCCCCCACGATTCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGt < 1:16866647/65‑1 (MQ=255) acTTTGCCGACACGATGCATGGTATAAACGTATTGAGCCACGTTGGACTTCGCCGCTATGTTTATCGt < 1:28834204/68‑1 (MQ=255) tttGCCGTCTCGATGGATGGTATAAACGATTTGAGCCACTTTGGACTTGGCCTCTATGTTTATCGTGa < 1:22113451/68‑1 (MQ=255) tttGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGa < 1:2306716/68‑1 (MQ=255) tttGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGa > 1:27116958/1‑68 (MQ=255) ttGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGAt < 1:23676338/68‑1 (MQ=255) gACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTAGCCTCTATGTTTATCGTGATAATGa > 1:26113670/1‑68 (MQ=255) acGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGtt > 1:5802679/1‑68 (MQ=255) acGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGtt > 1:21719588/1‑68 (MQ=255) cATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTttgaaaactcattatcacgataaacataga > 1:12101639‑M1/1‑38 (MQ=255) cATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATAGTGATAATGACTTTTCAAa < 1:27682210‑M2/68‑2 (MQ=255) aTGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAag < 1:24148463‑M2/68‑3 (MQ=255) tGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAagg > 1:4371819‑M2/1‑65 (MQ=255) tGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAag < 1:10697877‑M2/67‑3 (MQ=255) tGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAag < 1:4539435‑M2/67‑3 (MQ=255) gTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcg < 1:28174048‑M2/68‑6 (MQ=255) gTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcg < 1:8927946‑M2/68‑6 (MQ=255) gTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcg < 1:29127201‑M2/68‑6 (MQ=255) gTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcg < 1:27566864‑M2/68‑6 (MQ=255) gTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcg < 1:15090962‑M2/68‑6 (MQ=255) gTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcg < 1:25852008‑M2/68‑6 (MQ=255) gTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcg < 1:8603859‑M2/68‑6 (MQ=255) gTATAAACGAATTGAGCCACGTTGGACTTAGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcg < 1:24989719‑M2/68‑6 (MQ=255) gTATAAACGAATTGAGCCACGTGGGACTTCGCCTCTATGTTTATCGTGATAAGGAGTTTTCAAaggcg < 1:5092280‑M2/68‑6 (MQ=255) ataAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcgaa < 1:22457424‑M2/68‑8 (MQ=255) ataAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcgaa < 1:21113451‑M2/68‑8 (MQ=255) ataAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcgaa < 1:15303526‑M2/68‑8 (MQ=255) ttaacgAAGTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTGTTCAAaggcgaag > 1:28674762‑M2/3‑60 (MQ=255) taAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcgaag > 1:1146169‑M2/1‑60 (MQ=255) aaaCGAATTGAGCCACGTTGTACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAaggcgaagt > 1:26572085‑M2/1‑59 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTttgaaaactcattatcacgataaacatagaggcgaagtcca > 1:12516526‑M1/1‑27 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTttgaaaactcattatcacgataaacatagaggcgaagtcca > 1:16237992‑M1/1‑27 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAgtgt > 1:16407026/1‑67 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:8318233/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:26444755/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:6239036/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:4247910/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:23835679/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:4841055/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:10054849/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:22928596/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:16775670/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:17437928/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:14695151/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:14477276/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:13913113/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:13642454/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:18558221/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGAGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:15973646/1‑68 (MQ=255) cGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATAGTGATAATGAGTTTTCAAAGGCGAAGTGTa > 1:6176367/1‑68 (MQ=255) aTTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAg > 1:15667068/1‑66 (MQ=255) aTTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGc < 1:7255574/67‑1 (MQ=255) ttGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCt < 1:18314888/68‑1 (MQ=255) tGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCtt > 1:1987862/1‑68 (MQ=255) tGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCtt < 1:6571289/68‑1 (MQ=255) gCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCtttt > 1:2428316/1‑67 (MQ=255) gCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGAGAAGTGTAGCCtttt > 1:20546454/1‑67 (MQ=255) tGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGcc < 1:248653/68‑1 (MQ=255) tGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGcc < 1:3853150/68‑1 (MQ=255) tGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGcc < 1:9147457/68‑1 (MQ=255) tGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGcc < 1:9718421/68‑1 (MQ=255) tGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGc < 1:25488857/67‑1 (MQ=255) tGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGc < 1:22688724/67‑1 (MQ=255) aCTTCGCCTttgaaaactcattatcacgataaacttagaggcgaagtccaacgtggctcaattcgttt > 1:7090196‑M1/1‑9 (MQ=255) aCTTCGCCTttgaaaactcattatcacgataaacatagaggcgaagtcccacgtggctcaattcgttt > 1:8794099‑M1/1‑9 (MQ=255) aCTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGTGAAGTGTAGCCTTTTTCCCCGCCTaa > 1:28501341/1‑68 (MQ=255) aCTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGc > 1:2793512/1‑52 (MQ=255) aCTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCaaa > 1:1784466/1‑68 (MQ=255) aCTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTaa > 1:26895801/1‑68 (MQ=255) aCTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTaa > 1:19391516/1‑68 (MQ=255) aCTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTaa > 1:10933887/1‑68 (MQ=255) aCTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTaa > 1:19630220/1‑68 (MQ=255) aCTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTaa > 1:10406867/1‑68 (MQ=255) aCTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTaa > 1:21866075/1‑68 (MQ=255) cTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTaa < 1:12387081/67‑1 (MQ=255) cTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTAAt < 1:3990845/68‑1 (MQ=255) tCGCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttata < 1:23480147‑M1/68‑63 (MQ=255) cGCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttatac < 1:7525435‑M1/68‑64 (MQ=255) cGCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttatac < 1:9783702‑M1/68‑64 (MQ=255) cGCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttatac < 1:3698472‑M1/68‑64 (MQ=255) cGCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttatac < 1:16134907‑M1/68‑64 (MQ=255) cGCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttatac < 1:10194983‑M1/68‑64 (MQ=255) gCCTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttatacc < 1:16460251‑M1/68‑65 (MQ=255) ccTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTAATCCCa > 1:3067680/1‑67 (MQ=255) ccTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTAATCCCa > 1:20078652/1‑67 (MQ=255) cTttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttatacca < 1:6926259‑M1/67‑66 (MQ=255) tttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttataccatg < 1:7891615‑M1/68‑68 (MQ=255) tttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttataccatg < 1:2515194‑M1/68‑68 (MQ=255) tttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttataccatg < 1:18157687‑M1/68‑68 (MQ=255) tttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttataccatg < 1:17115830‑M1/68‑68 (MQ=255) tttgaaaactcattatcacgataaacatagaggcgaagtccaacgtggctcaattcgtttataccat > 1:6724523‑M1/1‑1 (MQ=255) | TTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTAATCCCAGCC > CP009273/4620287‑4620420 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |