| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 519440 = | 301 (0.850) | 17 (0.060) | 11/96 | NT | 5.4% | coding (724/4281 nt) | rhsD | Rhs family putative polymorphic toxin |
| ? | CP009273 | 519532 = | 334 (1.100) | coding (816/4281 nt) | rhsD | Rhs family putative polymorphic toxin | |||||
Only 100 of 407 total aligned reads displayed.
GCTGACGTACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGC > CP009273/519373‑519506 | tGACGTACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCcggg < 1:13839026/68‑1 (MQ=255) ggatacccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaggg > 1:14072863‑M1/66‑68 (MQ=255) ggatacccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaggg > 1:11032602‑M1/66‑68 (MQ=255) ggatacccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaggg > 1:19788731‑M1/66‑68 (MQ=255) ggatacccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaggg > 1:23691417‑M1/66‑68 (MQ=255) ggatacccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaggg > 1:7534703‑M1/66‑68 (MQ=255) cGTACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCcgggcg < 1:5293893/67‑1 (MQ=255) tcaCCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCcgggcggg > 1:19033206/3‑68 (MQ=255) gTACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCcgggcggg > 1:15647711/1‑68 (MQ=255) acccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCggg < 1:5701967‑M1/7‑1 (MQ=255) acccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCggg < 1:6590910‑M1/7‑1 (MQ=255) acccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCggg > 1:20858715‑M1/62‑68 (MQ=255) cccctgtcggggccgtattcggtacggggcagtgtgtcggggaacgctgaggctgagagaGGGCggg < 1:9259037‑M1/7‑1 (MQ=255) cccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCGGGa < 1:2980826‑M1/8‑1 (MQ=255) cccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCGGGa < 1:6296191‑M1/8‑1 (MQ=255) ccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCGGGa < 1:26382182‑M1/8‑1 (MQ=255) aCCGGCGTGAGGCCGCCGGTGCCCTGGCCGGGGAATTCACCGGCGTGCCGGACGGTGCCGGGCGGGAg > 1:28328330/1‑68 (MQ=38) aCCGGCGTGAGGCCGCCGGTGACCTGGCCGTGGAAAAAACCGGCGTGACGGACGGTGCCGGGCGGGAg > 1:12194404/1‑68 (MQ=38) aCCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAg > 1:13483483/1‑68 (MQ=255) cctgtcggggccgtattctgtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCGGGa < 1:19351084‑M1/8‑1 (MQ=255) cctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCGGGa < 1:22793451‑M1/8‑1 (MQ=255) ccGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGt < 1:19899164/68‑1 (MQ=255) cGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGTCGTGACGGACGGTGCCGGGCGGGAGt > 1:1003104/1‑67 (MQ=255) cGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGt > 1:14912422/1‑67 (MQ=255) cGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGt > 1:17283865/1‑67 (MQ=255) cGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGt > 1:27543764/1‑67 (MQ=255) gtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCGGGa < 1:14774832‑M1/8‑1 (MQ=255) gtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCGGGa < 1:218991‑M1/8‑1 (MQ=255) gtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCGGGa < 1:22068664‑M1/8‑1 (MQ=255) cGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCg > 1:8230686/1‑68 (MQ=255) gTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCg < 1:22623890/67‑1 (MQ=255) gTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGt < 1:19540100/68‑1 (MQ=255) gTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGt < 1:8933552/68‑1 (MQ=255) gTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGGGCCGGGCGGGAGTTCCGt < 1:7213071/68‑1 (MQ=255) cggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCGGGAGTTCCGt > 1:10634965‑M1/54‑68 (MQ=255) tGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCg > 1:9446770/1‑66 (MQ=255) gAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCt < 1:4077073/68‑1 (MQ=255) ggCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTgg > 1:22694102/1‑68 (MQ=255) gccgccGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGt > 1:17488012/1‑68 (MQ=255) gccgccGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGt > 1:27841976/1‑68 (MQ=255) gccgccGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGt > 1:12362363/1‑68 (MQ=255) gccgccGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGt < 1:11720352/68‑1 (MQ=255) gccgccGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGt > 1:21197484/1‑68 (MQ=255) ccgccgGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTgg < 1:20531119/66‑1 (MQ=255) acgccgGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGt > 1:10450125/2‑67 (MQ=255) gccgGTGACCTGGCCGGGGAAATCACCGGCGTGACGGCCGGTGCCGGGCGGGAGTTACGTATTGTGCt > 1:24477789/1‑68 (MQ=25) cgGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTg < 1:23154840/67‑1 (MQ=255) cgGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTg < 1:4734251/67‑1 (MQ=255) cgGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGa < 1:28803101/68‑1 (MQ=255) ggTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGa > 1:22361480/1‑67 (MQ=255) tGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGAcc < 1:23568258/67‑1 (MQ=255) gACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCAc > 1:22005449/1‑68 (MQ=255) aCCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCAc > 1:22251087/1‑67 (MQ=255) ccTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACg < 1:21617756/67‑1 (MQ=255) ccTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACg < 1:26471520/67‑1 (MQ=255) cTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCa < 1:8641664/68‑1 (MQ=255) cTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCa < 1:12709106/68‑1 (MQ=255) cTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCa < 1:15865247/68‑1 (MQ=255) ggCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAgg < 1:29006907/68‑1 (MQ=255) ccGGGGAAATCACCGGCGTGACGGACGTTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGgc > 1:5046665/1‑67 (MQ=255) ccGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGgc > 1:13068248/1‑67 (MQ=255) ccGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGgc > 1:4365106/1‑67 (MQ=255) ccGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGgc > 1:16450303/1‑67 (MQ=255) ccGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGgc > 1:1693874/1‑67 (MQ=255) ccGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGgc > 1:27158574/1‑67 (MQ=255) gAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGc < 1:21459807/67‑1 (MQ=255) gAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGc < 1:18781016/67‑1 (MQ=255) gAAATCACCGGCGGGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGc < 1:25916845/67‑1 (MQ=255) aaTCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGt < 1:17128876/67‑1 (MQ=255) aaTCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGt < 1:18463952/67‑1 (MQ=255) tCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCg < 1:26684448/68‑1 (MQ=255) tCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCg > 1:125559/1‑68 (MQ=255) tCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCg > 1:3478033/1‑68 (MQ=255) cACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCgg > 1:8506303/1‑68 (MQ=255) aCCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGa < 1:17559821/68‑1 (MQ=255) aCCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGa < 1:28727122/68‑1 (MQ=255) aCCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGa < 1:6823516/68‑1 (MQ=255) aCCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGa < 1:15309379/68‑1 (MQ=255) aCCGGCGGGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGa < 1:25056763/68‑1 (MQ=255) ggCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAaga > 1:7951451/1‑68 (MQ=255) ggCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAaga > 1:3789911/1‑68 (MQ=255) gacggacgGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGTAAGAGGccc < 1:18140887/68‑1 (MQ=255) gacggacgGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGccc < 1:14544230/68‑1 (MQ=255) gacggacgGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGccc < 1:11263520/68‑1 (MQ=255) cggacggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCg < 1:10896158/67‑1 (MQ=255) ggacggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGc > 1:9667373/1‑67 (MQ=255) ggacggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGc > 1:3175478/1‑67 (MQ=255) ggacggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCa < 1:25515663/68‑1 (MQ=255) acggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCa > 1:12608664/1‑66 (MQ=255) cggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCAcc < 1:26632884/67‑1 (MQ=255) cggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCAcc < 1:12952791/67‑1 (MQ=255) cggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCAcc < 1:15178723/67‑1 (MQ=255) ggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCAcc > 1:17961158/1‑66 (MQ=255) ggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACctc < 1:20123646/68‑1 (MQ=255) tGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACctct < 1:26035517/67‑1 (MQ=255) ggCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACctct < 1:26812502/66‑1 (MQ=255) gCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTc < 1:7635633/68‑1 (MQ=255) gCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTc > 1:11641228/1‑68 (MQ=255) gCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTc > 1:24697129/1‑68 (MQ=255) cgggcgggAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGc < 1:14290847/68‑1 (MQ=255) | GCTGACGTACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGC > CP009273/519373‑519506 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |