New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 1238033 =405 (1.150)17 (0.070) 13/76 NT 7.0% coding (504/915 nt) ldcA murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A
?CP009273 1238051 = 180 (0.750)coding (486/915 nt) ldcA murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A

Only 100 of 538 total aligned reads displayed.

TTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCA  >  CP009273/1237966‑1238098
                                                                   |                                                                 
 tttaccgagcaccatttctggctggcgttacgcaatgaaaccttcaccattgaatggcaaggggaagg                                                                  >  1:26734061‑M1/67‑68 (MQ=255)
 tttaccgagcaccatttctggctggcgttacgcaatgaaaccttcaccattgaatggcaaggggaagg                                                                  >  1:24035888‑M1/67‑68 (MQ=255)
 tGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACACCGTGCCTTCgg                                                                  <  1:7802575/68‑1 (MQ=255)
 tGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACACCGTGCCTTCg                                                                   >  1:22916689/1‑67 (MQ=255)
 tGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCgg                                                                  <  1:3694814/68‑1 (MQ=255)
  ttaccgagcaccatttctggctggcgttacgcaatgaaaccttcaccattgaatggcaaggggaaGGc                                                                 >  1:7243252‑M1/66‑68 (MQ=255)
  ggCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGc                                                                 <  1:13422823/68‑1 (MQ=255)
   gCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGc                                                                 >  1:13104272/1‑67 (MQ=255)
    cATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGcc                                                                <  1:28474095/67‑1 (MQ=255)
     ccgagcaccatttctggctggcgttacgcaatgaaaccttcaccattgaatggcaaggggaaGGCCCg                                                              >  1:19612045‑M1/63‑68 (MQ=255)
      tCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGa                                                             <  1:25892548/68‑1 (MQ=255)
      tCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGa                                                             <  1:19804423/68‑1 (MQ=255)
      cgagcaccatttctggctggcgttacgcaatgaaaccttcaccattgaatggcaaggggaaGGCCCg                                                              <  1:10035030‑M1/6‑1 (MQ=255)
      cgagcaccatttctggctggcgttacgcaatgaaaccttcaccattgaatggcaaggggaaGGCCCg                                                              <  1:14545079‑M1/6‑1 (MQ=255)
         gcaccatttctggctggcgttacgcaatgaaaccttcaccattgaatggcaaggggaaGGCCCGACAt                                                          <  1:15740055‑M1/10‑1 (MQ=255)
         aCGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACAt                                                          <  1:28198011/68‑1 (MQ=255)
         aCGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACAt                                                          >  1:1936336/1‑68 (MQ=255)
         aCGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACAt                                                          >  1:1906065/1‑68 (MQ=255)
          cGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATg                                                         <  1:25769378/68‑1 (MQ=255)
           ggTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGCCATg                                                         >  1:6117948/1‑67 (MQ=255)
           ggTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATg                                                         >  1:21663705/1‑67 (MQ=255)
           accatttctggctggcgttacgcaatgaaaccttcaccattgaatggcaaggggaaGGCCCGACAt                                                          >  1:25379182‑M1/57‑66 (MQ=255)
               tttctggctggcgttacgcaatgaaaccttcaccattgaatggcaaggggaaGGCCCGACATGTCggg                                                    >  1:23246958‑M1/53‑68 (MQ=255)
               tACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGGCCGGCCTGTgggg                                                    >  1:12043856/1‑68 (MQ=255)
               tACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCgg                                                     >  1:10594667/1‑67 (MQ=255)
                aCCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGCCATGTCggg                                                    >  1:28724032/1‑67 (MQ=255)
                aCCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCggg                                                    >  1:21033253/1‑67 (MQ=255)
                aCCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCggg                                                    >  1:27454572/1‑67 (MQ=255)
                aCCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCggg                                                    >  1:11483548/1‑67 (MQ=255)
                aCCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCggg                                                    >  1:20694450/1‑67 (MQ=255)
                aCCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCggg                                                    >  1:14868014/1‑67 (MQ=255)
                aCCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCggg                                                    >  1:16767850/1‑67 (MQ=255)
                aCCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCggg                                                    >  1:17005606/1‑67 (MQ=255)
                aCCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCggg                                                    <  1:1723377/67‑1 (MQ=255)
                aCCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCggg                                                    >  1:687471/1‑67 (MQ=255)
                aCCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCcgg                                                    <  1:5247466/67‑1 (MQ=255)
                aCCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCCACATGTCggg                                                    >  1:8586367/1‑67 (MQ=255)
                aCCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACCTGCCTTCGCCCCGACAACTCggg                                                    >  1:20057181/1‑67 (MQ=255)
                 ccGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCggg                                                    >  1:7984308/1‑66 (MQ=255)
                   gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACCACGTGCCTTCGGCCCGACATGTCGGGCCt                                                 >  1:2380682/1‑67 (MQ=255)
                   gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCGCGACATGTCGGGCCt                                                 >  1:7076166/1‑67 (MQ=255)
                   gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGGCCTGTCGGGccg                                                 >  1:25242184/1‑66 (MQ=255)
                   gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGCCATGTCGGGCCt                                                 >  1:2386873/1‑67 (MQ=255)
                   gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGccg                                                 >  1:22327501/1‑66 (MQ=255)
                   gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                 >  1:21961725/1‑67 (MQ=255)
                   gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                 >  1:3455894/1‑67 (MQ=255)
                   gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                 >  1:21371439/1‑67 (MQ=255)
                   gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                 >  1:5481632/1‑67 (MQ=255)
                   gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                 >  1:3177463/1‑67 (MQ=255)
                   gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                 >  1:2959746/1‑67 (MQ=255)
                   gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                 >  1:9642062/1‑67 (MQ=255)
                   gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                 >  1:26299862/1‑67 (MQ=255)
                   gATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCt                                                 >  1:2909137/1‑67 (MQ=255)
                     tCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTc                                               >  1:27796858/1‑67 (MQ=255)
                     tCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTc                                               >  1:20770526/1‑67 (MQ=255)
                      ctggcgttacgtaatgaaaccttcaccattgaatggcaaggggaaGGCCCGACATGTCGGGCCTTcc                                              >  1:6360124‑M1/46‑67 (MQ=255)
                          gAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACAAGTCGGGCCGTCCCCtt                                          >  1:8297564/1‑67 (MQ=255)
                            aaTCAGCATCGCAAGATTGCCTCCCCACAACGTTCCTTCGGCCCGACATGTCGGGCCTTCCCCTTTcc                                       <  1:15991627/68‑1 (MQ=255)
                            aaTCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGcc                                       <  1:25551843/68‑1 (MQ=255)
                            aaTCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGc                                        <  1:10262561/67‑1 (MQ=255)
                              tCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCAt                                     <  1:11109747/68‑1 (MQ=255)
                              tCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCAt                                     <  1:1505034/68‑1 (MQ=255)
                              tCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCAt                                     >  1:1884263/1‑68 (MQ=255)
                                   aTCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAAt                                >  1:4766493/1‑68 (MQ=255)
                                   aTCGAAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTGGGGCCTTCCCCTTGCCATTCa                                  <  1:4567010/66‑1 (MQ=255)
                                     cGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATgg                              <  1:9004168/68‑1 (MQ=255)
                                      gCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGt                             <  1:23953926/68‑1 (MQ=255)
                                      gCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGt                             <  1:23474207/68‑1 (MQ=255)
                                        aaGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGa                           <  1:5078094/68‑1 (MQ=255)
                                           aTTGCCTCCCCACAACGTGCCTTCGGCCCGCCATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAgg                        >  1:22139691/1‑68 (MQ=255)
                                           aTTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAgg                        >  1:4446172/1‑68 (MQ=255)
                                            ttGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGt                       <  1:10899279/68‑1 (MQ=255)
                                            ttGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGt                       <  1:1555708/68‑1 (MQ=255)
                                              gCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGtt                      >  1:17302513/1‑67 (MQ=255)
                                                cTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTc                    <  1:24658121/67‑1 (MQ=255)
                                                cTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTc                    <  1:26586676/67‑1 (MQ=255)
                                                 tCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCAt                  >  1:19305383/1‑68 (MQ=255)
                                                    ccACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGc               <  1:17733008/68‑1 (MQ=255)
                                                    ccACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGc               <  1:9748284/68‑1 (MQ=255)
                                                     cacaACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCg              >  1:24935961/1‑68 (MQ=255)
                                                        aaCGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTa            >  1:3040517/1‑67 (MQ=255)
                                                         aCGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAAc          >  1:18510138/1‑68 (MQ=255)
                                                         aCGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAAc          >  1:5883160/1‑68 (MQ=255)
                                                         aCGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAAc          >  1:23072715/1‑68 (MQ=255)
                                                         aCGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAAc          >  1:15274781/1‑68 (MQ=255)
                                                         aCGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAAc          >  1:13707505/1‑68 (MQ=255)
                                                         aCGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGGGAAGGGTTCATTGCGTAAc          >  1:5638808/1‑68 (MQ=255)
                                                         aCGTGCCTTCGGCCCGACATGGCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAAc          <  1:8791685/68‑1 (MQ=255)
                                                          cGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAAc          >  1:4124317/1‑67 (MQ=255)
                                                          cGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAAc          >  1:12276799/1‑67 (MQ=255)
                                                          cGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAAc          >  1:16181874/1‑67 (MQ=255)
                                                             ggggaaGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgcca      <  1:9236819‑M1/62‑1 (MQ=255)
                                                             gCCTTCGGCCCTACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgcc       <  1:12837255/67‑1 (MQ=255)
                                                              ccTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgcca      >  1:182735/1‑67 (MQ=255)
                                                              ccTTCGGCCCGACATGTCGGGCCGTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgcca      >  1:6692500/1‑67 (MQ=255)
                                                               cTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgccag     <  1:24235360/67‑1 (MQ=255)
                                                               cTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgccag     <  1:16365612/67‑1 (MQ=255)
                                                               cTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgccag     <  1:17999788/67‑1 (MQ=255)
                                                                 tCGGCCTGTCATGTCGGGCCTTCGCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgccagcca  <  1:27162240/68‑1 (MQ=255)
                                                                 tCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACgccagcca  <  1:14028922/68‑1 (MQ=255)
                                                                   |                                                                 
TTGGCATCCACGGTGTACCGATCAGTGAAATCAGCATCGCAAGATTGCCTCCCCACAACGTGCCTTCGGCCCGACATGTCGGGCCTTCCCCTTGCCATTCAATGGTGAAGGTTTCATTGCGTAACGCCAGCCA  >  CP009273/1237966‑1238098

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.