| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1405235 | NA (NA) | 3 (0.010) | 3/98 | NT | NA | intergenic (+94/+35) | dbpA/ttcA | ATP‑dependent RNA helicase, specific for 23S rRNA/tRNA 2‑thiocytidine biosynthesis protein |
| ? | CP009273 | = 1405259 | NA (NA) | intergenic (+118/+11) | dbpA/ttcA | ATP‑dependent RNA helicase, specific for 23S rRNA/tRNA 2‑thiocytidine biosynthesis protein | |||||
Only 100 of 571 total aligned reads displayed.
AGTAAACATCTTATTCGGGATTGCCGGATGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGCCGTAACTC > CP009273/1405168‑1405302 | agTAAACATCTTATTCGGGATTGCCGGATGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTa > 1:9334418/1‑68 (MQ=255)agTAAACATCTTATTCGGGATTGCCGGATGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTa > 1:19202375/1‑68 (MQ=255) aaaCATCTTATTCGGGATTGCCGGATGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAgc > 1:22666054‑M1/1‑65 (MQ=255) aaaCATCTTATTCGGGATTGCCGGATGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAgc < 1:26016871‑M1/67‑3 (MQ=255) aaaCATCTTATTCGGGATTGCCGGATGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAg < 1:8208133‑M1/66‑2 (MQ=255) aaCATCTTATTCGGGATTGCCGGATGCGACGCTGGCGGCGTCTTATCCGGCCTCCATAAGAGTAgccc < 1:28497113‑M1/68‑5 (MQ=255) aCATCTTATTCGGGATTGCCGGATGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAgcccg > 1:18386234‑M1/1‑63 (MQ=255) aCATCTTATTCGGGATTGCCGGATGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAgcccg > 1:17556842‑M1/1‑63 (MQ=255) aCATCTTATTCGGGATTGCCGGATGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAgcccg < 1:2900229‑M1/68‑6 (MQ=255) aCATCTTATTCGGGATTGCCGGATGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAgcccg < 1:415373‑M1/68‑6 (MQ=255) cATCTTATTCGGGATTGCCGGATGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTCgcccga > 1:29194232‑M1/1‑62 (MQ=255) cATCTTATTCGGGATTGCCGGATGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAgcccga > 1:8661927‑M1/1‑62 (MQ=255) aTCTTATTCGGGATTGCCGGATGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAgcccgat > 1:20053463‑M1/1‑61 (MQ=255) tCTTATTCGGGATTGCCGGATGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAgcccgat > 1:3651309‑M1/1‑60 (MQ=255) aTTCGGGATTGCCGGATGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCt < 1:20197705/68‑1 (MQ=255) aTTCGGGATTGCCGGATGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCt < 1:4786731/68‑1 (MQ=255) aTTCGGGATTGCCGGATGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCt < 1:26828679/68‑1 (MQ=255) ttCGGGATTGCCGGATGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCtt > 1:6083405/1‑68 (MQ=255) ttCGGGATTGCCGGATGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCtt > 1:23868942/1‑68 (MQ=255) cGGGATTGCCGGATGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTgc > 1:15171624/1‑68 (MQ=255) cGGGATTGCCGGATGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTgc > 1:15476401/1‑68 (MQ=255) ggATTGCCGGATGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTgcgc > 1:15799562/1‑68 (MQ=255) ggATTGCCGGATGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTgcgc > 1:20848948/1‑68 (MQ=255) aggccGGATGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATC < 1:4376543‑M2/66‑1 (MQ=255) gCCGGATGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGG > 1:22301725‑M2/1‑68 (MQ=255) cGGATGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGC > 1:13269218‑M2/1‑68 (MQ=255) cGGATGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGC < 1:10865263‑M2/68‑1 (MQ=255) cGGATGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGC > 1:8055948‑M2/1‑68 (MQ=255) cGGATGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGC > 1:21938117‑M2/1‑68 (MQ=255) cGGATGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGC > 1:23977182‑M2/1‑68 (MQ=255) cGGATGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGC > 1:24935253‑M2/1‑68 (MQ=255) cGGATGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGC > 1:13815541‑M2/1‑68 (MQ=255) cGGATGCGACGCGGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGC > 1:7011395‑M2/1‑68 (MQ=255) tGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGCtact > 1:27587080‑M2/1‑64 (MQ=255) tGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCt < 1:22193102/67‑1 (MQ=255) tGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCt < 1:656258/67‑1 (MQ=255) tGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCt < 1:21027608/67‑1 (MQ=255) gCGTCGCTGGCCGCGTCTTATGCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTAt < 1:10505031/68‑1 (MQ=255) gCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCTTCGGGCGCTa > 1:26471686/1‑67 (MQ=255) gCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTa > 1:5859128/1‑67 (MQ=255) gCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTAt < 1:19880796/68‑1 (MQ=255) gCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTAt < 1:10037356/68‑1 (MQ=255) gCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTAt < 1:189864/68‑1 (MQ=255) gCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTAt < 1:8526981/68‑1 (MQ=255) gCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTAt < 1:3795772/68‑1 (MQ=255) gCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTAt < 1:12650074/68‑1 (MQ=255) gCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTAt < 1:23406301/68‑1 (MQ=255) aCGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTAt > 1:7290555/1‑65 (MQ=255) aCGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTAt > 1:24533783/1‑65 (MQ=255) gCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTgg < 1:27794983/68‑1 (MQ=255) gCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTgg < 1:15696785/68‑1 (MQ=255) gCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTgg > 1:13689411/1‑68 (MQ=255) gCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTgg > 1:14697549/1‑68 (MQ=255) ccGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTAt < 1:21471116/67‑1 (MQ=255) tCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCaa > 1:5424258/1‑67 (MQ=255) tCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCaa > 1:2584715/1‑67 (MQ=255) tCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAAc < 1:12885949/68‑1 (MQ=255) tCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAAc < 1:16529668/68‑1 (MQ=255) ccGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAAcc > 1:12432888/1‑68 (MQ=255) ccGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAAcc > 1:1176721/1‑68 (MQ=255) ggCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACcac < 1:18665034/68‑1 (MQ=255) ggCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACcac < 1:15333517/68‑1 (MQ=255) gCCTCCATAAGAGTAgcccgatgcgcaagcgtatcgggctactcttatggaggccggataagacgcg > 1:11280426‑M1/1‑15 (MQ=255) ccTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACAt > 1:25548735/1‑68 (MQ=255) ccTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACAt > 1:7692236/1‑68 (MQ=255) aTAAGAGTAGCCCGATACGCTTGGGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGc < 1:17694298/68‑1 (MQ=255) aTAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGc < 1:13540544/68‑1 (MQ=255) aTAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGc < 1:12102162/68‑1 (MQ=255) aTAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGc < 1:3237312/68‑1 (MQ=255) aTAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGc < 1:27187767/68‑1 (MQ=255) aTAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGc < 1:5220351/68‑1 (MQ=255) aTAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGc < 1:16761890/68‑1 (MQ=255) aTAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGc < 1:23135976/68‑1 (MQ=255) aTAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGc < 1:11427438/68‑1 (MQ=255) tAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGcc > 1:24364783/1‑68 (MQ=255) tAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGcc < 1:19693740/68‑1 (MQ=255) agagTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGCCGt > 1:7796997/1‑68 (MQ=255) agTAgcccgatgcgcaagcgtatcgggctactcttatggaggccggataagacgcggccagcgtcgca > 1:14959963‑M1/1‑4 (MQ=255) agTAgcccgatgcgcaagcgtatcgggctactcttatggaggccggataagacgcggccagcgtcgca > 1:16022380‑M1/1‑4 (MQ=255) agTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGCCGTa > 1:14249139/1‑67 (MQ=255) agTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGCCGTa > 1:9807864/1‑67 (MQ=255) agTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGCCGTa > 1:19430951/1‑67 (MQ=255) agTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGCCGTa > 1:20497541/1‑67 (MQ=255) agTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGCCGTa > 1:21137541/1‑67 (MQ=255) agTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGCCGTa > 1:21822863/1‑67 (MQ=255) agTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGCCGTa > 1:17394/1‑67 (MQ=255) agTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGCCGTa > 1:17188627/1‑67 (MQ=255) agTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGCCGTa > 1:11994490/1‑67 (MQ=255) agTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGCCGTa > 1:24687509/1‑67 (MQ=255) agTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGCCGTa > 1:25301394/1‑67 (MQ=255) agTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGCCGTa > 1:26963405/1‑67 (MQ=255) agTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGCCGTa > 1:4991852/1‑67 (MQ=255) agTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGCCGTa > 1:4888612/1‑67 (MQ=255) agTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACAATCAGCCGtt > 1:8894428/1‑66 (MQ=255) agTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGATATTTCACTTCAACCACATTCAGCCGTaa > 1:18107482/1‑68 (MQ=255) agTAGCCCGATACGCTTGCGCATCGGGCGCTATACTGGTTATTTCACTTCAACCACATTCAGCCGTa > 1:13407142/1‑67 (MQ=255) gTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGCCGTaa < 1:26243831/67‑1 (MQ=255) gTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGCCGTa < 1:7519409/66‑1 (MQ=255) gTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACAACATTCAGACGTaaa > 1:9566960/1‑67 (MQ=39) aGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTAAGCCGTAACTc > 1:23631351/1‑68 (MQ=255) | AGTAAACATCTTATTCGGGATTGCCGGATGCGACGCTGGCCGCGTCTTATCCGGCCTCCATAAGAGTAGCCCGATACGCTTGCGCATCGGGCGCTATCCTGGTTATTTCACTTCAACCACATTCAGCCGTAACTC > CP009273/1405168‑1405302 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |