New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1823129149 (0.420)10 (0.030) 8/94 NT 6.9% coding (863/1479 nt) astD succinylglutamic semialdehyde dehydrogenase
?CP009273 = 1823150 144 (0.490)coding (842/1479 nt) astD succinylglutamic semialdehyde dehydrogenase

Only 100 of 379 total aligned reads displayed.

CAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAA  >  CP009273/1823063‑1823195
                                                                  |                                                                  
cAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGcccc                                                                   >  1:3782887/1‑68 (MQ=255)
    tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCtt                                                               >  1:3090123/1‑68 (MQ=255)
    tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCtt                                                               >  1:6759297/1‑68 (MQ=255)
    tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCtt                                                               >  1:12675211/1‑68 (MQ=255)
    tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCtt                                                               >  1:21884555/1‑68 (MQ=255)
    tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCt                                                                <  1:7512292/67‑1 (MQ=255)
    tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCt                                                                <  1:8590707/67‑1 (MQ=255)
    tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACG‑GCAAGAAACGCATCGCCCTGCGCCCCGCttt                                                              >  1:505223/1‑68 (MQ=255)
    tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACG‑GCAAGAAACGCATCGCCCTGCGACCCGCttt                                                              >  1:4172836/1‑68 (MQ=255)
     gCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCttt                                                              <  1:7680317/68‑1 (MQ=255)
     gCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCttt                                                              <  1:13469802/68‑1 (MQ=255)
       ccGGCGTTAATCGCTGGCTGCCGGCAACCAGACGCGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTc                                                            >  1:1710037/1‑68 (MQ=255)
        cGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCa                                                           <  1:23854949/68‑1 (MQ=255)
           cGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGc                                                         <  1:1798705/67‑1 (MQ=255)
           cGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGc                                                         <  1:11118748/67‑1 (MQ=255)
           cGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGc                                                         <  1:1077840/67‑1 (MQ=255)
           cGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGc                                                         <  1:18780238/67‑1 (MQ=255)
           cGTTAATCGCTGGCGGACGGCAACAAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGc                                                         <  1:17284542/67‑1 (MQ=255)
            gTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCgccgtttatt                                                          >  1:18669192‑M1/1‑55 (MQ=255)
            gTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCaa                                                       <  1:11534897/68‑1 (MQ=255)
                 tCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAc                                                  >  1:28790873/1‑68 (MQ=255)
                 tCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAc                                                  >  1:26165342/1‑68 (MQ=255)
                 tCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAc                                                  >  1:13887623/1‑68 (MQ=255)
                 tCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAc                                                  >  1:13734923/1‑68 (MQ=255)
                 tCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAc                                                  >  1:10510214/1‑68 (MQ=255)
                 tCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAc                                                  >  1:26041557/1‑68 (MQ=255)
                 tCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAc                                                  >  1:25166225/1‑68 (MQ=255)
                   gctggctgACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAcg                                                 >  1:15042786/1‑67 (MQ=255)
                         tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcg                                          >  1:26770796‑M2/1‑63 (MQ=255)
                         tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcg                                          >  1:49568‑M2/1‑63 (MQ=255)
                         tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                           >  1:27095509‑M2/1‑63 (MQ=255)
                         tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                           >  1:19500059‑M2/1‑63 (MQ=255)
                         tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                           >  1:9744140‑M2/1‑63 (MQ=255)
                         tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                           >  1:23316494‑M2/1‑63 (MQ=255)
                            cGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCgccgtttattgctgaaaagcggggcgca                                        <  1:19121299‑M1/67‑29 (MQ=255)
                             ggCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgccgg                                      <  1:4468425‑M2/68‑10 (MQ=255)
                             ggCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagg                                      >  1:17767329‑M2/1‑59 (MQ=255)
                             ggCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagg                                      <  1:6982064‑M2/68‑10 (MQ=255)
                               cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcaggg                                     >  1:11760286‑M2/1‑57 (MQ=255)
                               cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                                     <  1:16012095/67‑1 (MQ=255)
                               cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                                     <  1:25484002/67‑1 (MQ=255)
                                aaCCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagggc                                    >  1:6228378‑M2/1‑56 (MQ=255)
                                aaCCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagggc                                    >  1:14201925‑M2/1‑56 (MQ=255)
                                  ccAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAg                                 <  1:3293211/68‑1 (MQ=255)
                                   cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc                                <  1:19241664/68‑1 (MQ=255)
                                       cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagggcgatgcgt                             >  1:11857584‑M2/1‑49 (MQ=255)
                                       cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCg                               <  1:1694561/65‑1 (MQ=255)
                                        gAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGa                           <  1:9301676/68‑1 (MQ=255)
                                            aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCgg                       <  1:88322/68‑1 (MQ=255)
                                            aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCgg                       <  1:22940369/68‑1 (MQ=255)
                                            aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCgg                       <  1:16565911/68‑1 (MQ=255)
                                            aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCg                        >  1:21077667/1‑67 (MQ=255)
                                             acaaaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                      <  1:5510299/66‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                      <  1:18469385/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                      <  1:26628855/68‑1 (MQ=255)
                                             aGAAACGCAGCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                      <  1:19734987/68‑1 (MQ=255)
                                                caCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgt                   <  1:22392943/67‑1 (MQ=255)
                                                aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgt                   >  1:10456060/1‑68 (MQ=255)
                                                aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgt                   >  1:10576120/1‑68 (MQ=255)
                                                aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgt                   >  1:25941399/1‑68 (MQ=255)
                                                 aCGCATCGCCCTGCGCCCCGCTTTTCAGCAATATACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgtg                  >  1:15521537/1‑68 (MQ=255)
                                                 aCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgtg                  <  1:28204277/68‑1 (MQ=255)
                                                  cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGa                 <  1:2918548/68‑1 (MQ=255)
                                                     aTCGCCCTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctgg              >  1:24631133‑M1/1‑14 (MQ=255)
                                                     aTCGCCCTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctgg              >  1:28345696‑M1/1‑14 (MQ=255)
                                                     aTCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACaa              >  1:10125085/1‑68 (MQ=255)
                                                        gCCCTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggtt            >  1:7588801‑M1/1‑11 (MQ=255)
                                                        gCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAAc            >  1:5885311/1‑67 (MQ=255)
                                                         aCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGCCCGGCTGTGACAAACg           <  1:8246421‑M1/66‑1 (MQ=255)
                                                         aCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACg           <  1:2270739‑M1/66‑1 (MQ=255)
                                                         aCCTGCGCCCCGCGTTTCAGCTATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACg           <  1:20684290‑M1/66‑1 (MQ=255)
                                                         aCCTGCGCCCCGCGTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACg           <  1:19944139‑M1/66‑1 (MQ=255)
                                                          ccTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgcc         <  1:14537435‑M1/68‑60 (MQ=255)
                                                          ccTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgcc         >  1:27044224‑M1/1‑9 (MQ=255)
                                                          CCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGcc         <  1:15107508‑M1/68‑1 (MQ=255)
                                                            TGCGCCCCGCTTTTCAGCAATAATCGGCGGGCGCAGGTGCAGCGTTGAGCGGCTGTGTCAAACGCCg        <  1:4376154‑M1/67‑1 (MQ=255)
                                                            TGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg        <  1:27637763‑M1/67‑1 (MQ=255)
                                                             GCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGAc      >  1:26300880‑M1/1‑68 (MQ=255)
                                                              cgcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtca     >  1:12036425‑M1/1‑5 (MQ=255)
                                                              cgcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtc      >  1:9157375‑M1/1‑5 (MQ=255)
                                                              CGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACg           <  1:22152114‑M1/62‑1 (MQ=255)
                                                              CGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg        <  1:24230240‑M1/65‑1 (MQ=255)
                                                              CGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg        <  1:21434300‑M1/65‑1 (MQ=255)
                                                               gcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtca     >  1:12281932‑M1/1‑4 (MQ=255)
                                                               gcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtca     >  1:8379476‑M1/1‑4 (MQ=255)
                                                               gcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtca     >  1:4656464‑M1/1‑4 (MQ=255)
                                                               gcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtca     >  1:15609058‑M1/1‑4 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg    <  1:787633‑M1/68‑1 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg    <  1:13078408‑M1/68‑1 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg    <  1:28635737‑M1/68‑1 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg    <  1:2442169‑M1/68‑1 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg    <  1:25003569‑M1/68‑1 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg    <  1:15824998‑M1/68‑1 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg    <  1:3605351‑M1/68‑1 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg    <  1:18068588‑M1/68‑1 (MQ=255)
                                                                cccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtcag    >  1:17534558‑M1/1‑3 (MQ=255)
                                                                cccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtcag    >  1:22634477‑M1/1‑3 (MQ=255)
                                                                CCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa   <  1:23672122‑M1/68‑1 (MQ=255)
                                                                 ccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtcagc   <  1:1635746‑M1/67‑66 (MQ=255)
                                                                 CCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa   >  1:16719193‑M1/1‑67 (MQ=255)
                                                                  |                                                                  
CAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAA  >  CP009273/1823063‑1823195

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.