| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2640634 = | 281 (0.800) | 18 (0.060) | 8/94 | NT | 8.3% | coding (51/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain |
| ? | CP009273 | 2640664 = | 162 (0.550) | coding (21/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain | |||||
Only 100 of 401 total aligned reads displayed.
ACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCA > CP009273/2640569‑2640701 | aCTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGC > 1:13144041‑M1/1‑68 (MQ=255) cTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCG > 1:5470515‑M1/1‑68 (MQ=255) cTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCG > 1:18504863‑M1/1‑68 (MQ=255) cTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCG > 1:1072501‑M1/1‑68 (MQ=255) cTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCG > 1:24371237‑M1/1‑68 (MQ=255) gaccggcgcggctgaagatctgctgattgtcagaccgtaaatgcctcgcttgttaaccaaacgcg < 1:8429683‑M1/4‑1 (MQ=255) gaccggcgcggctgaagatctgctgattgtcagaccgtaaatgcctcgcttgttaaccaaaCGCGGCt > 1:20958831‑M1/62‑68 (MQ=255) gaccggcgcggctgaagatctgctgattgtcagaccgtaaatgcctcgcttgttaaccaaaCGCGGCt > 1:11731113‑M1/62‑68 (MQ=255) gaccggcgcggctgaagatctgctgattgtcagaccgtaaatgcctcgcttgttaaccaaaCGCGGCt > 1:22672850‑M1/62‑68 (MQ=255) tGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGc < 1:2170830/68‑1 (MQ=255) tGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTG > 1:9198818‑M1/1‑67 (MQ=255) gCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGcc > 1:8225717/1‑68 (MQ=255) gCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGcc > 1:7657799/1‑68 (MQ=255) gCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGcc > 1:17604180/1‑68 (MQ=255) ggTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAAc < 1:16388733/66‑1 (MQ=255) ggTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAAc < 1:1603937/66‑1 (MQ=255) ggTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGt > 1:3414544/1‑68 (MQ=255) agagGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTa > 1:4201203/1‑67 (MQ=255) agagGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTa > 1:10478022/1‑67 (MQ=255) agagGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTa > 1:21252873/1‑67 (MQ=255) agagGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTAt < 1:15719197/68‑1 (MQ=255) agGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATcc > 1:4002148/1‑68 (MQ=255) agGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATcc > 1:21965375/1‑68 (MQ=255) gCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCCACGTTATccc > 1:26684541/1‑66 (MQ=255) ccAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCcagc > 1:285231/1‑68 (MQ=255) ccAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCcagc > 1:4386925/1‑68 (MQ=255) ccAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCcagc > 1:5221872/1‑68 (MQ=255) ccAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCcagc > 1:7530721/1‑68 (MQ=255) ccAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCcagc > 1:791862/1‑68 (MQ=255) ccAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCcagc > 1:10251420/1‑68 (MQ=255) ccAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCca < 1:19329501/66‑1 (MQ=255) ccAGAGTTTATCTGATCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACCTTATCcagc > 1:479169/1‑68 (MQ=255) atctgctgattgtcagaccgtaaatgcctcgcttgttaaccaaaCGCGGCTGCCAACGTTATCcagca < 1:27919321‑M1/24‑1 (MQ=255) gTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCagcagc < 1:28702696/66‑1 (MQ=255) gTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCagcagc < 1:24086539/66‑1 (MQ=255) ttATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCcgc < 1:18420717/67‑1 (MQ=255) tCTGCTCCCCACGCTGCAAGAAAAAGGTGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGttt > 1:19758016/1‑68 (MQ=255) tCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGttt > 1:14961308/1‑68 (MQ=255) tCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGttt > 1:2217619/1‑68 (MQ=255) tCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGttt > 1:10004230/1‑68 (MQ=255) tGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTgg > 1:28175949/1‑68 (MQ=255) tGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTgg > 1:28438685/1‑68 (MQ=255) tGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTgg > 1:10167495/1‑68 (MQ=255) tGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTgg > 1:1698230/1‑68 (MQ=255) tGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTgg > 1:18650277/1‑68 (MQ=255) gCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGt < 1:14134457/68‑1 (MQ=255) gCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGt < 1:25796497/68‑1 (MQ=255) gCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGt < 1:27080950/68‑1 (MQ=255) gCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGt < 1:16255733/68‑1 (MQ=255) tCCCCCCGCTGCAAGAAAAAGCAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTa < 1:4523516/68‑1 (MQ=255) tCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTa > 1:12626691/1‑68 (MQ=255) cgtaaatgcctcgcttgtttaccaaaCGCGGCTGCCAACGTTATCCAGCAGCCGCGGTTGGGTAACaa < 1:11312266‑M1/42‑1 (MQ=255) aCGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACaa > 1:17409349/1‑67 (MQ=255) cGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGaagatctgctgcttgtcagcccgtaaatgcctcgct > 1:28867965‑M1/1‑32 (MQ=255) cGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGc > 1:29206363/1‑68 (MQ=255) gCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCg > 1:12419568/1‑68 (MQ=255) gCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCg > 1:11488515/1‑68 (MQ=255) cTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGa > 1:18854773/1‑68 (MQ=255) cTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGa > 1:1356510/1‑68 (MQ=255) cTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGa > 1:27645264/1‑68 (MQ=255) gCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAgg < 1:15388189/68‑1 (MQ=255) gCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAgg < 1:10855426/68‑1 (MQ=255) gCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAgg < 1:9638268/68‑1 (MQ=255) gCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAgg < 1:22979846/68‑1 (MQ=255) cctcgcttgttaaccaaaCGCGGCTGCCAACGTTATCCCGCAGCCGCGTTTGGGTAACAAGCGAGGCa < 1:22425674‑M1/50‑1 (MQ=255) cctcgcttgttaaccaaaCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAGCAAGCGAGGCa < 1:23488194‑M1/50‑1 (MQ=255) aaGAAAAATGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCa < 1:1191237/68‑1 (MQ=255) aaGAAAAAGGAGAAAGGGCGCGGCTGCCAAGGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCa < 1:13863193/68‑1 (MQ=255) aaGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCa < 1:24679081/68‑1 (MQ=255) aaGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCa < 1:28012871/68‑1 (MQ=255) aaGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCa < 1:670280/68‑1 (MQ=255) aaGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCa < 1:23725613/68‑1 (MQ=255) aGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAt < 1:3633868/68‑1 (MQ=255) aaaaaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAttt > 1:90260/1‑68 (MQ=255) aaaaaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAttt > 1:24820436/1‑68 (MQ=255) aaaaaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAttt > 1:22885490/1‑68 (MQ=255) aaaaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAtt < 1:12079216/66‑1 (MQ=255) ggAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACgg > 1:21460141/1‑67 (MQ=255) agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACgg > 1:22592549/1‑65 (MQ=255) agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGt < 1:5628434/66‑1 (MQ=255) agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGt < 1:11062463/66‑1 (MQ=255) gaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCt < 1:20350491/67‑1 (MQ=255) accaaaCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTg < 1:8704223‑M1/61‑1 (MQ=255) accaaaCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTg < 1:20104574‑M1/61‑1 (MQ=255) aaGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGATGCATTTACGGTCTGAc < 1:16678676/68‑1 (MQ=255) aaGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGAc < 1:3847970/68‑1 (MQ=255) aaGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGAc < 1:14457385/68‑1 (MQ=255) caaaCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACa < 1:20766735‑M1/64‑1 (MQ=255) aGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACa > 1:1165910/1‑68 (MQ=255) gggCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACaa > 1:24256851/1‑68 (MQ=255) gggCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACaa > 1:6242267/1‑68 (MQ=255) gggCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCGGACaa > 1:6021165/1‑68 (MQ=255) ggCGCGGCTGaagatctgctgattgtcagaccgtaaatgcctcgcttgttaaccaaacgcggctgctg < 1:14643733‑M1/68‑59 (MQ=255) ggCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACaa > 1:23120191/1‑67 (MQ=255) cgcgGCTGaagatctgctgattgtcagaccgtaaatgcctcgcttgttaaccaaacgcggctgctgg < 1:17907726‑M1/67‑60 (MQ=255) cgcgGCTGaagatctgctgattgtcagaccgtaaatgcctcgcttgttaaccaaacgcggctgctgg < 1:3161842‑M1/67‑60 (MQ=255) cgcgGCTGaagatctgctgattgtcagaccgtaaatgcctcgcttgttaaccaaacgcggctgctgg < 1:25265987‑M1/67‑60 (MQ=255) cgcgGCTGaagatctgctgattgtcagaccgtaaatgcctcgcttgttaaccaaacgcggctgctgg < 1:20669615‑M1/67‑60 (MQ=255) cgcgGCTGaagatctgctgattgtcagaccgtaaatgcctcgcttgttaaccaaacgcggctgctgg < 1:26440675‑M1/67‑60 (MQ=255) cgcgGCTGaagatctgctgaatgtcagaccgtaaatgcctcgcttgttaaccaaacgcggctgctgg < 1:729498‑M1/67‑60 (MQ=255) | ACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCA > CP009273/2640569‑2640701 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |