| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2640634 = | 281 (0.800) | 18 (0.060) | 8/94 | NT | 8.3% | coding (51/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain |
| ? | CP009273 | 2640664 = | 162 (0.550) | coding (21/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain | |||||
Only 100 of 337 total aligned reads displayed.
TATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTCGCCCG > CP009273/2640597‑2640729 | tCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGttt > 1:10004230/1‑68 (MQ=255) tCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGttt > 1:22483917/1‑68 (MQ=255) tCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGttt > 1:2217619/1‑68 (MQ=255) cTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTg > 1:6245984/1‑68 (MQ=255) cTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTg < 1:15229169/68‑1 (MQ=255) cTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTg < 1:14212483/68‑1 (MQ=255) tGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTgg > 1:10167495/1‑68 (MQ=255) tGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTgg > 1:3627213/1‑68 (MQ=255) tGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTgg > 1:20040513/1‑68 (MQ=255) tGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTgg > 1:18650277/1‑68 (MQ=255) tGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTgg > 1:17662551/1‑68 (MQ=255) gCTCCCCACGCTTCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGt < 1:9448560/68‑1 (MQ=255) gCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGt < 1:27080950/68‑1 (MQ=255) gCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGt < 1:16255733/68‑1 (MQ=255) gCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGt < 1:20726653/68‑1 (MQ=255) gCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGt < 1:21042562/68‑1 (MQ=255) gCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGt < 1:14899396/68‑1 (MQ=255) cagaccgtaaatgcctcgcttgttaaccaaacgcggctgctggataacgttggcagccgcgTTTGGt < 1:8704223‑M2/6‑1 (MQ=255) tCCCCCCGCTGCAAGAAAAAGCAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTa < 1:4523516/68‑1 (MQ=255) tCCCCACGCTGCAAGAAAAAGTAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTa < 1:3407687/68‑1 (MQ=255) tCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGtt < 1:28805849/67‑1 (MQ=255) tCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTa > 1:21277859/1‑68 (MQ=255) cgtaaatgcctcgcttgtttaccaaaCGCGGCTGCCAACGTTATCCAGCAGCCGCGGTTGGGTAACaa < 1:11312266‑M1/42‑1 (MQ=255) cgtaaatgcctcgcttgttaaccaaaCGCGGCTGCCAACGTTATGCAGCAGCCGCGTTTGGTTAACaa < 1:22878456‑M1/42‑1 (MQ=255) aCGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACaa > 1:2325563/1‑67 (MQ=255) aCGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACaa > 1:7606782/1‑67 (MQ=255) cGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGc > 1:17320273/1‑68 (MQ=255) gCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTACCAAGCg > 1:20806690/1‑68 (MQ=255) gCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCg > 1:10655159/1‑68 (MQ=255) cTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGa > 1:1356510/1‑68 (MQ=255) cTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGa > 1:18854773/1‑68 (MQ=255) cTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTATGGTTAACAAGCGa > 1:5921850/1‑68 (MQ=255) tGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAg > 1:7317231/1‑68 (MQ=255) gCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAgg < 1:8472683/68‑1 (MQ=255) gCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAgg < 1:20109345/68‑1 (MQ=255) gCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAgg < 1:10855426/68‑1 (MQ=255) gCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAgg < 1:22979846/68‑1 (MQ=255) cctcgcttgttaaccaaaCGCGGCTGCCAACGTTATCCCGCAGCCGCGTTTGGGTAACAAGCGAGGCa < 1:22425674‑M1/50‑1 (MQ=255) cctcgcttgttaaccaaaCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAGCAAGCGAGGCa < 1:23488194‑M1/50‑1 (MQ=255) cctcgcttgttaaccaaaCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCa < 1:26621813‑M1/50‑1 (MQ=255) cctcgcttgttaaccaaaCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCa < 1:2608487‑M1/50‑1 (MQ=255) aaGAAAAATGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCa < 1:1191237/68‑1 (MQ=255) aaGAAAAAGGAGAAAGGGCGCGGCTGCCAAGGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCa < 1:13863193/68‑1 (MQ=255) aaGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCa < 1:28012871/68‑1 (MQ=255) aaGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCa < 1:11232889/68‑1 (MQ=255) aaGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCa < 1:4429955/68‑1 (MQ=255) aaGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCa < 1:670280/68‑1 (MQ=255) aaGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCa < 1:12007231/68‑1 (MQ=255) ctcgcttgttaaccaaacgcggctgctggataacgttggcagccgcgTTTGGTTAACAAGCGAGGCa < 1:10992514‑M2/20‑1 (MQ=255) aGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAt < 1:29011724/68‑1 (MQ=255) aaaaaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAttt > 1:21974713/1‑68 (MQ=255) aaaaaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAttt > 1:90260/1‑68 (MQ=255) aaaaaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAttt > 1:81998/1‑68 (MQ=255) aaaaaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAttt > 1:16844227/1‑68 (MQ=255) aaaaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAtt < 1:12079216/66‑1 (MQ=255) ggAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACgg > 1:28171401/1‑67 (MQ=255) ggAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACgg > 1:491321/1‑67 (MQ=255) ggAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACgg > 1:21460141/1‑67 (MQ=255) ggAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACgg > 1:27713191/1‑67 (MQ=255) agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGt < 1:21872228/66‑1 (MQ=255) agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGt < 1:24029469/66‑1 (MQ=255) agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGt < 1:5628434/66‑1 (MQ=255) gaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCt < 1:24256158/67‑1 (MQ=255) gaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCt < 1:11520786/67‑1 (MQ=255) aaGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGAc < 1:3847970/68‑1 (MQ=255) aGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACa > 1:19199430/1‑68 (MQ=255) aGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACa > 1:1165910/1‑68 (MQ=255) gggCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACaa > 1:246576/1‑68 (MQ=255) gggCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACaa > 1:11822967/1‑68 (MQ=255) gcgcGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACaa < 1:9175567/66‑1 (MQ=255) GCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATca < 1:1667377‑M1/67‑1 (MQ=255) GCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATca > 1:3712706‑M1/1‑67 (MQ=255) GCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATca > 1:12735029‑M1/1‑67 (MQ=255) GGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATcagca > 1:17179747‑M1/1‑68 (MQ=255) GGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATcagca > 1:12492486‑M1/1‑68 (MQ=255) TGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGAt > 1:13233918‑M1/1‑68 (MQ=255) TGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGAt > 1:12241738‑M1/1‑68 (MQ=255) TGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGAt > 1:2374458‑M1/1‑68 (MQ=255) TGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGAt > 1:17584625‑M1/1‑68 (MQ=255) TGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGAt > 1:26839224‑M1/1‑68 (MQ=255) TGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGAt > 1:27518332‑M1/1‑68 (MQ=255) TGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGAt > 1:18300008‑M1/1‑68 (MQ=255) aCGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTca > 1:1545359‑M2/1‑66 (MQ=255) aCGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTca < 1:14617936‑M2/68‑3 (MQ=255) gTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcag < 1:6143210‑M2/67‑4 (MQ=255) ccAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcagccgcg < 1:17907726‑M2/67‑9 (MQ=255) ccAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcagccgcg < 1:25265987‑M2/67‑9 (MQ=255) ccAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcagccgcg < 1:26440675‑M2/67‑9 (MQ=255) ccAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcagccgcg < 1:11377443‑M2/67‑9 (MQ=255) ccAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcagccgcg < 1:22671714‑M2/67‑9 (MQ=255) ccAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcagccgcg < 1:3161842‑M2/67‑9 (MQ=255) ccAGCAGCCGCGGTTGGTTAACAAGCGAGGCATTTACGGTCTGCCAATCAGCAGATCTTcagccgcg < 1:22902814‑M2/67‑9 (MQ=255) cagcagCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcagccgcgcc < 1:11040373‑M2/68‑11 (MQ=255) gcagccgcgTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCgg > 1:13641180‑M2/10‑68 (MQ=255) gcagccgcgTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCgg > 1:19652358‑M2/10‑68 (MQ=255) gcagccgcgTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCgg > 1:2035731‑M2/10‑68 (MQ=255) agccgcgTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGt < 1:24811163‑M2/60‑1 (MQ=255) agccgcgTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTc > 1:28352196‑M2/8‑68 (MQ=255) agccgcgTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTc > 1:16001987‑M2/8‑68 (MQ=255) gTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTcgcccg < 1:28617626‑M2/66‑1 (MQ=255) | TATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTCGCCCG > CP009273/2640597‑2640729 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |