| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2747582 = | 329 (0.930) | 16 (0.050) | 5/94 | NT | 6.2% | coding (76/291 nt) | ratB | UPF0125 family protein |
| ? | CP009273 | 2747605 = | 207 (0.700) | coding (53/291 nt) | ratB | UPF0125 family protein | |||||
Only 100 of 413 total aligned reads displayed.
AAATCGATATCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTT > CP009273/2747515‑2747648 | aaaTCGATATCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCcctc < 1:29086751/68‑1 (MQ=255)aaaTCGATATCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCcctc < 1:403854/68‑1 (MQ=255) aaTCGATATCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCcctcc < 1:3262485/68‑1 (MQ=255) aaTCGATATCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCcctcc < 1:12312067/68‑1 (MQ=255) aagaggtttacagtgccaggtaaaattgccgttgaggtggcttatgcgctacctgagaagcagtacc > 1:20536666‑M1/66‑67 (MQ=255) aTCGATATCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCcctcct < 1:3634624/68‑1 (MQ=255) agaggtttacagtgccaggtaaaattgccgttgaggtggcttatgcgctacctgagaagcagtaCCt < 1:20115949‑M1/3‑1 (MQ=255) agaggtttacagtgccaggtaaaattgccgttgaggtggcttatgcgctacctgagaagcagtaCCt < 1:15749305‑M1/3‑1 (MQ=255) cGATATCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGc > 1:10178318/1‑68 (MQ=255) cGATATCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGc > 1:20735300/1‑68 (MQ=255) gATATCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCa < 1:615212/68‑1 (MQ=255) ggtttacagtgccaggtaaaattgccgttgaggtggcttatgcgctacctgagaagcagtaCCTGc > 1:10803864‑M1/62‑66 (MQ=255) ggtttacagtgccaggtaaaattgccgttgaggtggcttatgcgctacctgagaagcagtaCCTGc > 1:4228324‑M1/62‑66 (MQ=255) tatCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGc < 1:16678518/68‑1 (MQ=255) tttacagtgccaggtaaaattgccgttgaggtggcttatgcgctacctgagaagcagtaCCTGCAGc > 1:7888667‑M1/60‑67 (MQ=255) tttacagtgccaggtaaaattgccgttgaggtggcttatgcgctacctgagaagcagtaCCTGCAGc > 1:10936125‑M1/60‑67 (MQ=255) gttacagtgccaggtaaaattgccgttgaggtggcttatgcgctacctgagatgcagtaCCTGCAGc > 1:25154829‑M1/60‑67 (MQ=255) atCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCg > 1:26402773/1‑68 (MQ=255) atCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCg > 1:18619149/1‑68 (MQ=255) tCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCg > 1:28131833/1‑67 (MQ=255) tCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCg > 1:23281260/1‑67 (MQ=255) tCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGt < 1:848373/68‑1 (MQ=255) ggTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTc > 1:24716294/1‑67 (MQ=255) ggTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTc > 1:16153405/1‑67 (MQ=255) ggTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTc > 1:11389596/1‑67 (MQ=255) ggTACGCAATTCCAGCAAGCCACTGGCGCGAATAGATTCTTAAAACGTCGCGCACTCCTGAAGCGTCa > 1:28637609/1‑68 (MQ=255) gCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTc > 1:15143420/1‑66 (MQ=255) cAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTc > 1:15923190/1‑65 (MQ=255) aaTTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTg < 1:10013577/68‑1 (MQ=255) aaTTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTg < 1:9548757/68‑1 (MQ=255) aaTTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTg < 1:9784451/68‑1 (MQ=255) aaTTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTg < 1:3901569/68‑1 (MQ=255) aaTTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTg < 1:6020704/68‑1 (MQ=255) aaTTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTg < 1:22275034/68‑1 (MQ=255) aaTTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTg < 1:659861/68‑1 (MQ=255) aaTTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTg < 1:7648893/68‑1 (MQ=255) aaTTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTg < 1:9106555/68‑1 (MQ=255) aaTTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTg < 1:20436596/68‑1 (MQ=255) aaTTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTg < 1:16219114/68‑1 (MQ=255) aaTTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTg < 1:14057389/68‑1 (MQ=255) aaTTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTg < 1:18062992/68‑1 (MQ=255) aaTTCCAGCAACCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTg < 1:24396003/68‑1 (MQ=255) tCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAg < 1:1730494/68‑1 (MQ=255) tCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAg < 1:13185397/68‑1 (MQ=255) tCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGGCACTCGCTGCAg < 1:25715468/68‑1 (MQ=255) cAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGt < 1:6354335/68‑1 (MQ=255) cAGCAAGCCACTGGCGCGAATAGCTTCATCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGt < 1:8064573/68‑1 (MQ=255) aGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGt > 1:21511682/1‑67 (MQ=255) cAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGt > 1:28325809/1‑65 (MQ=255) cAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGt > 1:17742463/1‑65 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:1148140/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:27705622/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:4616617/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:27010790/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:5701160/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:25585128/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:25094976/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:13033837/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:23002473/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:11991449/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:2205881/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:21667623/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCt < 1:9207220/66‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCt < 1:8659639/66‑1 (MQ=255) aCTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTtct < 1:7287312/68‑1 (MQ=255) aCTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTtct < 1:1280297/68‑1 (MQ=255) aCTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTtct < 1:9669995/68‑1 (MQ=255) tGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCa < 1:24770305/68‑1 (MQ=255) tGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCa < 1:341953/68‑1 (MQ=255) ggCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAg > 1:17011344/1‑68 (MQ=255) gcgAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTa > 1:27812098/1‑68 (MQ=255) gAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgc < 1:10448720/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc < 1:21408675/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc < 1:22628042/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc < 1:14296483/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc < 1:24933433/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc < 1:26130470/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcg < 1:9342599/67‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcg < 1:437041/67‑1 (MQ=255) ttcttcAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAg < 1:5470323/68‑1 (MQ=255) ttcttcAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAg < 1:134945/68‑1 (MQ=255) ttcttcAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAg < 1:27940567/68‑1 (MQ=255) tcttcAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAg > 1:1963661/1‑67 (MQ=255) tcAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCa > 1:18938740/1‑67 (MQ=255) aaCCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCAcc > 1:8276313/1‑67 (MQ=255) aaCCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCt < 1:22894153/68‑1 (MQ=255) aCCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTc > 1:27397880/1‑68 (MQ=255) aCCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTc > 1:19216883/1‑68 (MQ=255) gTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAAc > 1:5195195/1‑68 (MQ=255) cgcgCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGGTTCTCAGGTAGCGCATAAGCCACCTCAACg > 1:21033731/1‑67 (MQ=255) aagcagtaCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCCACg < 1:23466457‑M1/59‑1 (MQ=255) aagcagtaCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACg < 1:1467298‑M1/59‑1 (MQ=255) aagcagtaCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACg < 1:17559454‑M1/59‑1 (MQ=255) gcagtaCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCa < 1:6948750‑M1/62‑1 (MQ=255) gcCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCaa < 1:25329719/68‑1 (MQ=255) gcCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCa < 1:1940887/67‑1 (MQ=255) cctcctGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAAtt > 1:20290894/1‑68 (MQ=255) cctcctGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAAt < 1:12120979/67‑1 (MQ=255) tcctGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAAtttt < 1:14978613/68‑1 (MQ=255) CCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAAtttt < 1:11546410‑M1/67‑1 (MQ=255) | AAATCGATATCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTT > CP009273/2747515‑2747648 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |