| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3547436 | 281 (0.800) | 17 (0.050) | 10/106 | NT | 6.0% | coding (993/2706 nt) | malT | mal regulon transcriptional activator |
| ? | CP009273 | = 3547454 | 265 (0.790) | coding (1011/2706 nt) | malT | mal regulon transcriptional activator | |||||
Only 100 of 381 total aligned reads displayed.
GGATGGATGATACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCC > CP009273/3547372‑3547502 | ggatggatGATACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGc < 1:21128/68‑1 (MQ=255)ggatggatGATACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGc < 1:1403568/68‑1 (MQ=255)ggatggatGATACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGATAACTTCCTGCGCCAGCGCTg > 1:15367789/1‑67 (MQ=255) tggatgATACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAg < 1:21376427/68‑1 (MQ=255) tggatgATACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAg > 1:22643834/1‑68 (MQ=255) ggatgATACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGt < 1:1077009/68‑1 (MQ=255) ggatgATACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGt < 1:12351565/68‑1 (MQ=255) gatgatACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTg > 1:26174423/1‑68 (MQ=255) gatgatACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTg > 1:3684757/1‑68 (MQ=255) tgatACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCcgccagttcc < 1:28914138‑M1/68‑11 (MQ=255) tgatACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTggg > 1:2166495/1‑68 (MQ=255) tgatACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTggg > 1:24430530/1‑68 (MQ=255) tgatACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTggg > 1:11209258/1‑68 (MQ=255) tgatACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTgg < 1:8371931/67‑1 (MQ=255) tgatACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTgg < 1:20237511/67‑1 (MQ=255) atACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGa > 1:24744987/1‑67 (MQ=255) aCCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGa > 1:28265593/1‑65 (MQ=255) aCCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGa > 1:21497367/1‑65 (MQ=255) aCCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGa > 1:27951080/1‑65 (MQ=255) aCCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGa > 1:23165464/1‑65 (MQ=255) ccGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTg < 1:13801796/68‑1 (MQ=255) ccGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTg > 1:4295365/1‑68 (MQ=255) ccGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTg > 1:1878992/1‑68 (MQ=255) cGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTgg < 1:17757511/68‑1 (MQ=255) cGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTggcg > 1:26524204/1‑67 (MQ=255) cGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTggcg > 1:23956361/1‑67 (MQ=255) cGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTggcg > 1:20800520/1‑67 (MQ=255) cGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTggcg < 1:1299827/67‑1 (MQ=255) ggTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGa > 1:5343629/1‑67 (MQ=255) cTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGc < 1:12774883/68‑1 (MQ=255) cTGCAATCACCCGCTGTTTGGTAACTTCCTGGGCCAGCGCcgccagggcccactggcagcgcgggcg < 1:12003338‑M1/67‑28 (MQ=255) tGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGcc > 1:22023026/1‑68 (MQ=255) tGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGcc < 1:25679832/68‑1 (MQ=255) gCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCg < 1:15794889/68‑1 (MQ=255) cTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCgg > 1:16896883/1‑68 (MQ=255) tataACCCGCTGTTTGGTAACTTCCTTCGCCAGCTCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGa > 1:17412027/1‑68 (MQ=255) tATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCtgccagttcccgctggccgcggtggcgcaggt > 1:14858408‑M1/1‑36 (MQ=255) tATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCgca > 1:27110760/1‑66 (MQ=255) tATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGa > 1:8775849/1‑68 (MQ=255) tATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGa > 1:4817116/1‑68 (MQ=255) tATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGa > 1:13193434/1‑68 (MQ=255) tATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGa > 1:8119733/1‑68 (MQ=255) tATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGa > 1:3337002/1‑68 (MQ=255) tATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGa > 1:22303784/1‑68 (MQ=255) tATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGa < 1:14530203/68‑1 (MQ=255) tATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGa > 1:5580955/1‑68 (MQ=255) tATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGa > 1:15569617/1‑68 (MQ=255) tATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGa > 1:18101228/1‑68 (MQ=255) tATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGa > 1:20512541/1‑68 (MQ=255) tATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGa > 1:16968324/1‑68 (MQ=255) tATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGa > 1:17034741/1‑68 (MQ=255) tATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGa > 1:25479549/1‑68 (MQ=255) tATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGa > 1:19044733/1‑68 (MQ=255) tATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGa > 1:18499486/1‑68 (MQ=255) tAGCACCCGCTGTTTGGTAACTTCCTGCGCCCGCGCTGCCAGTGGGAACTGGCGgcgctggcgcagga > 1:9509094‑M2/1‑54 (MQ=255) cACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGaaa > 1:19394746/1‑67 (MQ=255) cACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAAt < 1:20103431/68‑1 (MQ=255) aCCCGCTGTCTGGAAACTTCCTGCGCCACCGCTGCCACTGCGAACGGGCGgcgctggcgcaggaagtt > 1:17553154‑M2/1‑50 (MQ=255) aCCCGCGGTTTGGTACCATCCTCCGCCAGCGCAGCCAGTGGCAACTGGCGgcgctggcgcaggaagtt > 1:3449015‑M2/1‑50 (MQ=255) cccGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATcc > 1:10031921/1‑68 (MQ=255) cccGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATcc > 1:11823405/1‑68 (MQ=255) cccGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATcc > 1:23579021/1‑68 (MQ=255) cccGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATcc > 1:6400058/1‑68 (MQ=255) cccGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATcc > 1:16498915/1‑68 (MQ=255) cccGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATc > 1:7073479/1‑67 (MQ=255) cccGCTGTTTGGTAACTTCCTGAGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATca > 1:11511733/1‑67 (MQ=255) gCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCAcc > 1:1375933/1‑68 (MQ=255) cTGTTTGGTAACTTCCTGCGCCAGCGCTGCAAGTGGGAACTGGCGGCGGAGATGCCGGAAATCCACCg > 1:15013738/1‑68 (MQ=255) tGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGt > 1:5779600/1‑68 (MQ=255) tGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGt > 1:2940139/1‑68 (MQ=255) ttGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTgc < 1:3886410/67‑1 (MQ=255) tGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTgccg < 1:16041779/68‑1 (MQ=255) gTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTgccgcc > 1:16744931/1‑68 (MQ=255) aaCTTCCTGCGCCAGCGCcgccagttcccactggccgcgctggcgcaggaagttaccaaagggcgggg > 1:17244042‑M1/1‑18 (MQ=255) aaCTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCcgccgc > 1:6829486/1‑68 (MQ=255) aaCTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCcgccgc > 1:19131673/1‑68 (MQ=255) aaCTTCCTGCGCCACCGCGGCCCGGGGCAACTGGCGgcgctggcgcaggaagttaccaaacagcggg > 1:14695167‑M2/1‑36 (MQ=255) aaCTTCCCGCGCCCGCGCTGCCAGTGGGAACTGGCGgcgctggcgcaggaagttaccaaacagcggg > 1:28163721‑M2/1‑36 (MQ=255) tCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGaa < 1:13505690/68‑1 (MQ=255) tCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGaa > 1:7881967/1‑68 (MQ=255) ccTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGaaa < 1:313553/68‑1 (MQ=255) ccTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGaaa < 1:28641058/68‑1 (MQ=255) tGCGCCAGCGCcgccagttcccactggcagcgctggcgcaggaagttaccaaacagcgggtgatagca > 1:9064069‑M1/1‑11 (MQ=255) tGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGc < 1:10279731/68‑1 (MQ=255) cgcCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTg > 1:441711/1‑68 (MQ=255) cgcCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTg > 1:28536389/1‑68 (MQ=255) cgcCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTg > 1:9805063/1‑68 (MQ=255) gcCAGCGCcgccagttcccactggcagcgctggcgcaggaagttaccaaacagcgggtgatagcaga > 1:25075231‑M1/1‑8 (MQ=255) gcCAGCGCTTCCAGTGGGAACTGGCGGCTGAGCTGCCGGAAATGCACCGTGCCGCCGCAGAAAGCTgg < 1:27608759/68‑1 (MQ=255) gcCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTgg < 1:14151469/68‑1 (MQ=255) ccAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGa > 1:22824676/1‑68 (MQ=255) cgccgccagttcccactggcagcgctggcgcaggaagttaccaaacagcgggtgatagcagaaccact < 1:8672174‑M1/68‑66 (MQ=255) gccgccagttcccactggcagcgctggcgcaggaagttaccaaacagcgggtgatagcagaaccactc < 1:19822336‑M1/68‑67 (MQ=255) gcTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGc < 1:278457/67‑1 (MQ=255) gcTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGc < 1:6178650/67‑1 (MQ=255) gcTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGc < 1:27460940/67‑1 (MQ=255) gcTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGc < 1:2638168/67‑1 (MQ=255) gcTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGc < 1:7693409/67‑1 (MQ=255) gcTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGc < 1:15899605/67‑1 (MQ=255) gcTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGc < 1:12547844/67‑1 (MQ=255) | GGATGGATGATACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCC > CP009273/3547372‑3547502 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |