| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3693271 | 207 (0.590) | 17 (0.060) | 6/94 | NT | 8.6% | intergenic (+18/+69) | bcsG/ldrD | DUF3260 family inner membrane protein associated with cellulose production/toxic polypeptide, small |
| ? | CP009273 | = 3693281 | 188 (0.630) | intergenic (+28/+59) | bcsG/ldrD | DUF3260 family inner membrane protein associated with cellulose production/toxic polypeptide, small | |||||
Only 100 of 469 total aligned reads displayed.
AACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACAC > CP009273/3693204‑3693338 | aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga > 1:1500352/1‑68 (MQ=255) aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga > 1:19628706/1‑68 (MQ=255) aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga > 1:10150183/1‑68 (MQ=255) aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga > 1:26487403/1‑68 (MQ=255) aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga > 1:3757310/1‑68 (MQ=255) aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga > 1:3849580/1‑68 (MQ=255) aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga > 1:13428710/1‑68 (MQ=255) aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga > 1:13161745/1‑68 (MQ=255) aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga > 1:7995781/1‑68 (MQ=255) aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga > 1:12032665/1‑68 (MQ=255) ccGTAGGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCagag < 1:17471396/68‑1 (MQ=255) ccGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCagag > 1:22101946/1‑68 (MQ=255) ccGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCagag < 1:14217267/68‑1 (MQ=255) ccGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCagag > 1:24947941/1‑68 (MQ=255) ccGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCagag < 1:8610822/68‑1 (MQ=255) ccGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCagag > 1:26067720/1‑68 (MQ=255) cGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAGAACTCCGCAGAGt > 1:6535671/1‑68 (MQ=255) cGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTc > 1:5114640/1‑67 (MQ=255) gTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTcc > 1:1436255/1‑67 (MQ=255) ttCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTccc > 1:7872023/1‑67 (MQ=255) ttCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTccc > 1:234161/1‑67 (MQ=255) tCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTccccc < 1:25096010/68‑1 (MQ=255) tCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTccccc < 1:1573259/68‑1 (MQ=255) cGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCc > 1:9587155‑M2/1‑67 (MQ=255) ccTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCct < 1:8851391‑M2/67‑3 (MQ=255) ccTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCct < 1:9045522‑M2/67‑3 (MQ=255) gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg > 1:3265704‑M2/1‑62 (MQ=255) gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg > 1:4958529‑M2/1‑62 (MQ=255) gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg > 1:14488061‑M2/1‑62 (MQ=255) gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg > 1:17851215‑M2/1‑62 (MQ=255) gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg > 1:5919840‑M2/1‑62 (MQ=255) gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg > 1:11697702‑M2/1‑62 (MQ=255) gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg > 1:8224024‑M2/1‑62 (MQ=255) gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcg < 1:23316732‑M2/67‑6 (MQ=255) aCGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAACGGCCGCAGAGTTTCCCCCctgcggc > 1:10988558‑M2/1‑60 (MQ=255) aCGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg < 1:15885253‑M2/66‑7 (MQ=255) aCGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg < 1:22211347‑M2/66‑7 (MQ=255) ggcgACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGt > 1:22467183/1‑67 (MQ=255) ggcgACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGt > 1:19032587/1‑67 (MQ=255) cTGGGCGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcggcctttttcgtt > 1:28827013‑M2/1‑50 (MQ=255) gCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAAt > 1:690334/1‑68 (MQ=255) ccTTACCCGCAGTAAGAACGAAAAAGGCCGCAGgggggaaactct < 1:1625896‑M1/45‑13 (MQ=255) ccTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAAtt > 1:3667520/1‑68 (MQ=255) ttACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcggcctttttcgttcttactgcgg > 1:4859467‑M2/1‑41 (MQ=255) ttACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGc < 1:19891858/68‑1 (MQ=255) aCCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCa < 1:16953677/68‑1 (MQ=255) ccGCAGTAAGAACGAAAAAGGCCGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaa > 1:24272405‑M1/1‑27 (MQ=255) ccGCAGTAAGAACGAAAAAGGCCGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaa > 1:25694007‑M1/1‑27 (MQ=255) ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt > 1:12870333/1‑68 (MQ=255) ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt > 1:5623340/1‑68 (MQ=255) ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt > 1:12217666/1‑68 (MQ=255) ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt > 1:16493924/1‑68 (MQ=255) ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt > 1:19752827/1‑68 (MQ=255) ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCACTGCGGCCTGGTCCGGGCGCAAATTGCAAtt > 1:4243385/1‑68 (MQ=255) gCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTAc > 1:3141335/1‑68 (MQ=255) tAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCa > 1:10867136/1‑68 (MQ=255) aaGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg < 1:26970036/68‑1 (MQ=255) aGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGc > 1:24558901/1‑68 (MQ=255) caCGAAAAAGGCCGCAGAGTTTCCACCCTGCGGCCTGGTCCGGGCGCCCATTGCCATGACCCCAGca > 1:28533020/2‑66 (MQ=25) aaCGAAAAAGGCCGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccag > 1:22734838‑M1/1‑17 (MQ=255) aaCGAAAAAGGCCGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccag > 1:2128632‑M1/1‑17 (MQ=255) aaCGAAAAAGGCCGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccag > 1:20529059‑M1/1‑17 (MQ=255) aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg > 1:15454347/1‑65 (MQ=255) aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg > 1:13978393/1‑65 (MQ=255) aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg > 1:13722943/1‑65 (MQ=255) aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg > 1:6197936/1‑65 (MQ=255) aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg > 1:7304258/1‑65 (MQ=255) aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg > 1:28001843/1‑65 (MQ=255) aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg > 1:25299495/1‑65 (MQ=255) aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg > 1:17238379/1‑65 (MQ=255) aCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGcc < 1:22769331/66‑1 (MQ=255) cGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTg > 1:5819914/1‑67 (MQ=255) aaaGGCCGCAGAGTTTCCCCCCTTCGGCCTGTTCCGGGCGCAAATTGCCATTACGGCATCCTGACGcc < 1:4544309/68‑1 (MQ=21) aaaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGcc < 1:23674698/68‑1 (MQ=255) aaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGccc < 1:10278786/68‑1 (MQ=255) aaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGccc < 1:2912896/68‑1 (MQ=255) aaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGccc < 1:21133822/68‑1 (MQ=255) aaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGccc < 1:21642358/68‑1 (MQ=255) ctgCCGCAGTGTTTGCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCTGCCTGACGCCCg < 1:18777447/66‑1 (MQ=21) ggCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGc > 1:27225468/1‑68 (MQ=255) gCCGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgt > 1:25946474‑M1/1‑7 (MQ=255) gCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCa > 1:19297314/1‑68 (MQ=255) ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttc > 1:1836391‑M1/1‑6 (MQ=255) ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttc > 1:9332334‑M1/1‑6 (MQ=255) ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttc > 1:3458492‑M1/1‑6 (MQ=255) ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttc > 1:1756901‑M1/1‑6 (MQ=255) ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttc > 1:12746089‑M1/1‑6 (MQ=255) ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttc > 1:12687424‑M1/1‑6 (MQ=255) ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttc > 1:20972906‑M1/1‑6 (MQ=255) ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgt < 1:23085493‑M1/66‑61 (MQ=255) ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgt < 1:18545180‑M1/66‑61 (MQ=255) ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgt < 1:24202391‑M1/66‑61 (MQ=255) ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcac > 1:20595096‑M1/1‑6 (MQ=255) ccGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGc < 1:18036004/66‑1 (MQ=255) cGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATg < 1:11562156/68‑1 (MQ=255) agagTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGac < 1:21781435/67‑1 (MQ=255) agagTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGac < 1:10577317/67‑1 (MQ=255) aGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttcaggc > 1:28495618‑M1/1‑2 (MQ=255) ggggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttcaggcg > 1:15764593‑M1/1‑1 (MQ=255) ggggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttcaggcg > 1:15256183‑M1/1‑1 (MQ=255) | AACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACAC > CP009273/3693204‑3693338 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |