New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 3693271207 (0.590)17 (0.060) 6/94 NT 8.6% intergenic (+18/+69) bcsG/ldrD DUF3260 family inner membrane protein associated with cellulose production/toxic polypeptide, small
?CP009273 = 3693281 188 (0.630)intergenic (+28/+59) bcsG/ldrD DUF3260 family inner membrane protein associated with cellulose production/toxic polypeptide, small

Only 100 of 331 total aligned reads displayed.

TCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCG  >  CP009273/3693214‑3693348
                                                                   |                                                                   
tCGCCTGAACGGCGGAGACTGGGTGCCTTACCCGGAGTAAGAACGAAAAAGGCCGCAGAGTTTccccc                                                                     <  1:3771372/68‑1 (MQ=255)
 cGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCc                                                                    >  1:9587155‑M2/1‑67 (MQ=255)
 cGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCc                                                                    >  1:15256183‑M2/1‑67 (MQ=255)
   ccTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCct                                                                   <  1:2332085‑M2/67‑3 (MQ=255)
   ccTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCct                                                                   <  1:17397720‑M2/67‑3 (MQ=255)
   ccTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCct                                                                   <  1:16942705‑M2/67‑3 (MQ=255)
      gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                               >  1:22494833‑M2/1‑62 (MQ=255)
      gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                               >  1:7661136‑M2/1‑62 (MQ=255)
      gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                               >  1:6608185‑M2/1‑62 (MQ=255)
      gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                               >  1:5919840‑M2/1‑62 (MQ=255)
      gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                               >  1:4958529‑M2/1‑62 (MQ=255)
      gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                               >  1:3265704‑M2/1‑62 (MQ=255)
      gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                               >  1:25186047‑M2/1‑62 (MQ=255)
      gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                               >  1:20972906‑M2/1‑62 (MQ=255)
      gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                               >  1:20270306‑M2/1‑62 (MQ=255)
      gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                               >  1:14488061‑M2/1‑62 (MQ=255)
        aCGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCGctgcgg                                                               <  1:5358077‑M2/66‑7 (MQ=255)
        aCGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcggc                                                              >  1:25946474‑M2/1‑60 (MQ=255)
        aCGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                               <  1:23085493‑M2/66‑7 (MQ=255)
        aCGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                               <  1:24202391‑M2/66‑7 (MQ=255)
        aCGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                               <  1:13589254‑M2/66‑7 (MQ=255)
          ggcggcGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTg                                                           >  1:11922731/1‑68 (MQ=255)
            cggcgACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcggccttt                                                          >  1:17918910‑M2/1‑56 (MQ=255)
             ggcgACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGt                                                         <  1:2162421/67‑1 (MQ=255)
             ggcgACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTc                                                        <  1:3491019/68‑1 (MQ=255)
                  cTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcggcctttttcgtt                                                    >  1:14915652‑M2/1‑50 (MQ=255)
                      gTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCa                                                <  1:2238243/67‑1 (MQ=255)
                      gTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCa                                                <  1:4356706/67‑1 (MQ=255)
                       tGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCaaa                                              >  1:5110685/1‑68 (MQ=255)
                       tGCCTTACCCGAAGTAAGAACGAAAACGGCCGCAGAGTTTCCCCCctgcggcctttttcgttcttact                                              >  1:5804294‑M2/1‑45 (MQ=255)
                        gCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAAt                                             >  1:10972156/1‑68 (MQ=255)
                        gCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAAt                                             >  1:12997797/1‑68 (MQ=255)
                         ccTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAAtt                                            >  1:19098567/1‑68 (MQ=255)
                          cTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcggcctttttcgttcttactgcg                                           >  1:21235104‑M2/1‑42 (MQ=255)
                           ttACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcggcctttttcgttcttactgcgg                                          >  1:16343467‑M2/1‑41 (MQ=255)
                           ttACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcggcctttttcgttcttactgcgg                                          >  1:25694007‑M2/1‑41 (MQ=255)
                           ttACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGc                                          <  1:2853055/68‑1 (MQ=255)
                            tACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGcc                                         <  1:9329122/68‑1 (MQ=255)
                             aCCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCa                                        <  1:19470110/68‑1 (MQ=255)
                             aCCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCa                                        >  1:10161393/1‑68 (MQ=255)
                               ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt                                      >  1:28777542/1‑68 (MQ=255)
                               ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt                                      >  1:18485267/1‑68 (MQ=255)
                               ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt                                      >  1:4788552/1‑68 (MQ=255)
                               ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt                                      >  1:8784097/1‑68 (MQ=255)
                               ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt                                      >  1:12217666/1‑68 (MQ=255)
                               ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt                                      >  1:8403545/1‑68 (MQ=255)
                               ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt                                      >  1:10769412/1‑68 (MQ=255)
                                   aGTAAGAACGAAACAGCCCGCAGAGTTTCCCCCctgcggcctttttcgttcttactgcgggtaaggc                                   >  1:13999496‑M2/1‑33 (MQ=255)
                                     tAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCa                                >  1:2613419/1‑68 (MQ=255)
                                      aaGAACGAATAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg                               <  1:27067219/68‑1 (MQ=255)
                                      aaGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg                               <  1:26970036/68‑1 (MQ=255)
                                       aGAACGATAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg                               >  1:10399790/1‑67 (MQ=255)
                                         aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg                               >  1:19870333/1‑65 (MQ=255)
                                         aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg                               >  1:28001843/1‑65 (MQ=255)
                                         aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg                               >  1:17238379/1‑65 (MQ=255)
                                         aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg                               >  1:13978393/1‑65 (MQ=255)
                                         aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg                               >  1:20583876/1‑65 (MQ=255)
                                         aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg                               >  1:24710039/1‑65 (MQ=255)
                                         aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg                               >  1:6197936/1‑65 (MQ=255)
                                         aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg                               >  1:21864477/1‑65 (MQ=255)
                                          aCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGcc                             <  1:22769331/66‑1 (MQ=255)
                                          aCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGcc                             <  1:22176649/66‑1 (MQ=255)
                                              aaaaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACg                        <  1:18912761/67‑1 (MQ=255)
                                               ccaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGgcgc                       >  1:12737224/3‑67 (MQ=255)
                                               aaaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGcc                      <  1:25330240/68‑1 (MQ=255)
                                               aaaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGc                       >  1:404928/1‑67 (MQ=255)
                                               aaaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGc                       >  1:3688716/1‑67 (MQ=255)
                                                aaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGccc                     <  1:21133822/68‑1 (MQ=255)
                                                aaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGccc                     >  1:8035669/1‑68 (MQ=255)
                                                aaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGccc                     <  1:15836164/68‑1 (MQ=255)
                                                aaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGccc                     <  1:15761208/68‑1 (MQ=255)
                                                aaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGccc                     <  1:2912896/68‑1 (MQ=255)
                                                 ctgCCGCAGTGTTTGCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCTGCCTGACGCCCg                    <  1:18777447/66‑1 (MQ=21)
                                                  ggCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGc                   >  1:24237781/1‑68 (MQ=255)
                                                  ggCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGc                   >  1:27225468/1‑68 (MQ=255)
                                                   gCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCa                  >  1:3017321/1‑68 (MQ=255)
                                                    ccGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGc                   <  1:7150927/66‑1 (MQ=255)
                                                    ccGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCa                  <  1:14347799/67‑1 (MQ=255)
                                                     cGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATg                <  1:11562156/68‑1 (MQ=255)
                                                        agagTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGac              <  1:15441343/67‑1 (MQ=255)
                                                        agagTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGac              <  1:10577317/67‑1 (MQ=255)
                                                        agagTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGac              <  1:2177596/67‑1 (MQ=255)
                                                           ggttCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACg           <  1:28327864/65‑1 (MQ=255)
                                                           gTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGaca             <  1:18209651/65‑1 (MQ=255)
                                                           gTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACg           <  1:22714499/67‑1 (MQ=255)
                                                           gTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACg           <  1:2435955/67‑1 (MQ=255)
                                                           gTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACg           <  1:7358036/67‑1 (MQ=255)
                                                           gTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACg           <  1:17737277/67‑1 (MQ=255)
                                                             ttCCCCCCTGCGGCCTTGTCCGGGCGCAAATTGCCATAACGGCAGCCTGACGCCCGCATGACACGtt         <  1:16723927/67‑1 (MQ=25)
                                                                cccccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACt      >  1:24999440/1‑67 (MQ=255)
                                                                cccccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACt      >  1:8963261/1‑67 (MQ=255)
                                                                cccccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACt      >  1:13340697/1‑67 (MQ=255)
                                                                cccccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACt      >  1:26513934/1‑67 (MQ=255)
                                                                 ccccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACtt     >  1:23774893/1‑67 (MQ=255)
                                                                  cccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTcc   >  1:23527287/1‑68 (MQ=255)
                                                                  cccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTcc   >  1:20419358/1‑68 (MQ=255)
                                                                  cccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTcc   >  1:19605194/1‑68 (MQ=255)
                                                                  cccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTcc   >  1:11283387/1‑68 (MQ=255)
                                                                   ccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCg  <  1:16134960/68‑1 (MQ=255)
                                                                   ccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCg  <  1:17184900/68‑1 (MQ=255)
                                                                   |                                                                   
TCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCG  >  CP009273/3693214‑3693348

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.