| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3851553 = | 348 (0.990) | 32 (0.120) | 13/86 | NT | 12.3% | coding (212/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein |
| ? | CP009273 | 3851602 = | 188 (0.690) | coding (163/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein | |||||
Only 100 of 746 total aligned reads displayed.
ATAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAAC > CP009273/3851486‑3851622 | gatagtctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgc < 1:9378710‑M1/1‑1 (MQ=255)gatagtctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgc < 1:25182785‑M1/1‑1 (MQ=255) tAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCC > 1:27584704‑M1/1‑67 (MQ=255) tAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCC < 1:18860‑M1/67‑1 (MQ=255) aGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCAC > 1:10011253‑M1/1‑68 (MQ=255) ccGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGG > 1:29249831‑M1/1‑68 (MQ=255) ccGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGG > 1:23534599‑M1/1‑68 (MQ=255) tctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACggg > 1:6846176‑M1/63‑68 (MQ=255) cGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGG < 1:17846361‑M1/68‑1 (MQ=255) cGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGG < 1:7113480‑M1/67‑1 (MQ=255) ctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACggg > 1:16492492‑M1/62‑67 (MQ=255) ctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACggg > 1:1860684‑M1/62‑67 (MQ=255) ctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACggg > 1:26951616‑M1/62‑67 (MQ=255) ctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACggg > 1:27336667‑M1/62‑67 (MQ=255) ctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACgg > 1:26179199‑M1/62‑66 (MQ=255) ctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACgg > 1:20242409‑M1/62‑66 (MQ=255) ctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACgg > 1:5278491‑M1/62‑66 (MQ=255) tggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACGGGcc > 1:9707394‑M1/61‑68 (MQ=255) aTCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGG > 1:3542083‑M1/1‑68 (MQ=255) aTCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGG < 1:15612640‑M1/68‑1 (MQ=255) aTCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGG < 1:6143713‑M1/68‑1 (MQ=255) aTCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGG < 1:27121357‑M1/68‑1 (MQ=255) aTCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGG < 1:12754446‑M1/68‑1 (MQ=255) aTCCTTAAAGTAGCGCCCCATAGGGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGG < 1:22525044‑M1/68‑1 (MQ=255) cggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACGGGCCgg > 1:16304155‑M1/58‑67 (MQ=255) cggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACGGGCCgg > 1:25735158‑M1/58‑67 (MQ=255) cggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACGGGCCgg > 1:8170199‑M1/58‑67 (MQ=255) ggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACGGGCCgg < 1:8498170‑M1/10‑1 (MQ=255) ggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACGGGCCGGAc > 1:29067652‑M1/57‑68 (MQ=255) ccTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGG > 1:23714401‑M1/1‑66 (MQ=255) ttAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTg < 1:27659164/68‑1 (MQ=255) cggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACGGGCCGGACt > 1:21339598‑M1/55‑67 (MQ=255) cggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACGGGCCGGACt > 1:17061962‑M1/55‑67 (MQ=255) tAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTgg < 1:23225436/68‑1 (MQ=255) tAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTgg < 1:194944/68‑1 (MQ=255) tAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTgg < 1:8856260/68‑1 (MQ=255) tAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTgg < 1:26652177/68‑1 (MQ=255) tAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTgg < 1:24884157/68‑1 (MQ=255) tAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTgg < 1:21887380/68‑1 (MQ=255) aaGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGtt < 1:23035485/68‑1 (MQ=255) gTAGCGCCCCATTGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTa > 1:6458591/1‑67 (MQ=255) gTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTa > 1:13534449/1‑67 (MQ=255) gTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTa > 1:2446938/1‑67 (MQ=255) gTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTa > 1:394404/1‑67 (MQ=255) gTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTa > 1:4720181/1‑67 (MQ=255) gTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTa > 1:13960437/1‑67 (MQ=255) gTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTa > 1:1603563/1‑67 (MQ=255) atggcCCCATAGTGGATATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGc < 1:12389900/64‑1 (MQ=255) aGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAg < 1:18041493/66‑1 (MQ=255) aGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCg < 1:12977086/68‑1 (MQ=255) aGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCg < 1:14740432/68‑1 (MQ=255) cccAAAGTGGAGATGTGTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGa < 1:5716512/67‑1 (MQ=255) attgTGGAGATGTTTTTGCCTTGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATAcc < 1:15863101/65‑1 (MQ=255) aTAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCCCGGGCCGGACTGGTTAGCGTAGATAcc > 1:1769508/1‑68 (MQ=255) aTAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATAcc < 1:27849719/68‑1 (MQ=255) aTAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGGCCACGGGCCGGACTGGTTAGCGTAGATAcc < 1:4925173/68‑1 (MQ=255) aGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCgg > 1:19207154/1‑68 (MQ=255) aGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCgg < 1:18721186/68‑1 (MQ=255) gTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGt > 1:22829165/1‑68 (MQ=255) tccgcctacacctgttcaccggtttgtacgcctgCACGGGCCGGGCTGGGTAGCGTAGATACCGGTaa < 1:10786318‑M1/34‑1 (MQ=255) ggAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGt < 1:19936754/66‑1 (MQ=255) ggAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTaa > 1:15397825/1‑68 (MQ=255) ggAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTaa > 1:10258851/1‑68 (MQ=255) ggAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTaa > 1:26379389/1‑68 (MQ=255) ggAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTaa > 1:26489384/1‑68 (MQ=255) ggAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTa < 1:11260791/67‑1 (MQ=255) agaTGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGTTTAGCGTAGATAACGGTAAAt > 1:20093515/1‑68 (MQ=255) agaTGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAAt > 1:2865696/1‑68 (MQ=255) agaTGTTTTTGCCTGGCGCGACGTTGTTGGTCCACAGGGCGGACTGGTTAGCGTAGATACCGGTAAAt > 1:5445149/1‑68 (MQ=255) gATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATa < 1:24667824‑M2/68‑2 (MQ=255) aTGTTTTTGCATGGCGCGACTTTTTGGGGCCACGTTACGGACTGGTTAGCGTAGATACCGTTAAATAg < 1:1145997/68‑1 (MQ=255) tGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagt > 1:14461187‑M2/1‑65 (MQ=255) tGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATag < 1:7675814‑M2/67‑3 (MQ=255) tGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATag > 1:2800902‑M2/1‑65 (MQ=255) tGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATag > 1:2363528‑M2/1‑65 (MQ=255) tGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATag < 1:20624070‑M2/67‑3 (MQ=255) tGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATag > 1:21694750‑M2/1‑65 (MQ=255) tttttGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtcc < 1:5927801‑M2/68‑6 (MQ=255) cctgttcaccggtttgtacgcctgCACGGGCCGGACTGGGTAGCGTAGATACCGGTAATTAGTCCgg < 1:20932056‑M1/43‑1 (MQ=255) gCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtccggccc > 1:25504309‑M2/1‑58 (MQ=255) gCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTGAGCGTAGATACCGGTAAATagtccggccc > 1:3335225‑M2/1‑58 (MQ=255) cTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtccggcccgt > 1:12029805‑M2/1‑56 (MQ=255) cTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtccggcccgt > 1:13686550‑M2/1‑56 (MQ=255) tcaccggtttgtacgcctgCCCGGGCCGGACTGGTTAGCGTTGTTACCGGTAAATAGTCCGGGCcgg < 1:23891174‑M1/48‑2 (MQ=255) tcaccggtttgtacgcctgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTg < 1:11067156‑M1/49‑1 (MQ=255) gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg < 1:11770505/68‑1 (MQ=255) gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg < 1:7937595/68‑1 (MQ=255) gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg < 1:17347652/68‑1 (MQ=255) gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg < 1:9022339/68‑1 (MQ=255) gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAg > 1:3062696/1‑67 (MQ=255) ggtttgtacgcctgCACGGGCCGGCCTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGc < 1:18369366‑M1/54‑1 (MQ=255) tttgtacgcctgCACGGGCCGGGCGGGTTAGCGTAGATACCGGTTAATAGTCCGGCGCGTGGAGGCGt < 1:28290883‑M1/56‑1 (MQ=255) cGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGt > 1:18953981/1‑67 (MQ=255) cGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGt < 1:1407079/67‑1 (MQ=255) tgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAAcc > 1:74106/1‑68 (MQ=255) cctgCACGGGCCGGACTGGTTTGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCg < 1:15184901‑M1/64‑1 (MQ=255) tCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt > 1:4479371/1‑68 (MQ=255) tCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt > 1:22257297/1‑68 (MQ=255) ccACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt < 1:2418673/67‑1 (MQ=255) CACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGa > 1:10477341‑M1/1‑68 (MQ=255) | ATAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAAC > CP009273/3851486‑3851622 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |