| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3851553 = | 348 (0.990) | 32 (0.120) | 13/86 | NT | 12.3% | coding (212/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein |
| ? | CP009273 | 3851602 = | 188 (0.690) | coding (163/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein | |||||
Only 100 of 524 total aligned reads displayed.
CGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATCA > CP009273/3851537‑3851669 | cgcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAg > 1:7052559/1‑68 (MQ=255) gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg < 1:19993476/68‑1 (MQ=255) gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg < 1:18310327/68‑1 (MQ=255) gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg < 1:1678117/68‑1 (MQ=255) gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg < 1:15253470/68‑1 (MQ=255) cggtttgtacgcctgcacgggccggactatttaccggtatctacgctaaccaggccggcccgtgCAgg < 1:455549‑M2/4‑1 (MQ=255) gACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCg < 1:10040886/68‑1 (MQ=255) tttgtacgcctgcacgggccggactatttaccggtatctacgctaaccagtccggcccgtgCAGGCg < 1:3798780‑M2/6‑1 (MQ=255) ttgtacgcctgcacgggccggactagttaccggtatctacgctacccagtccggcccgtgCAGGCGt < 1:22329392‑M2/7‑1 (MQ=255) cGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGt > 1:27068024/1‑67 (MQ=255) cGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGt < 1:1407079/67‑1 (MQ=255) cgcctgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACaaa < 1:12595927‑M1/61‑1 (MQ=255) tgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAAcc < 1:1291115/68‑1 (MQ=255) tgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCAGTGCAGGCGTACAAAcc > 1:8001378/1‑68 (MQ=255) cctgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCg < 1:29098891‑M1/64‑1 (MQ=255) tgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt < 1:24917971‑M1/66‑1 (MQ=255) tCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt > 1:11510823/1‑68 (MQ=255) tCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt > 1:4479371/1‑68 (MQ=255) tCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt > 1:26485472/1‑68 (MQ=255) ccACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt < 1:4192293/67‑1 (MQ=255) ccACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt < 1:18819593/67‑1 (MQ=255) ACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGa < 1:9242201‑M1/67‑1 (MQ=255) GGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACa < 1:19483652‑M1/68‑1 (MQ=255) GGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTACGGCCCGGGCAGGCGTACAAACCGGAGAACa < 1:14749687‑M1/68‑1 (MQ=255) GGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAg < 1:5723811‑M1/68‑1 (MQ=255) gccggactatttcccggtatctacgcaacccaggccggcccgggCAGGCGTACAAACCGGTGAACAgg < 1:23639677‑M2/24‑1 (MQ=255) ccggactaattaccggtatctacgctacccagtccggcccgtgCAGGCGTACAAACCGGTGAACAgg < 1:20932056‑M2/24‑1 (MQ=255) CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg > 1:22147756‑M1/1‑67 (MQ=255) CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg > 1:3268617‑M1/1‑67 (MQ=255) CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg > 1:1630879‑M1/1‑67 (MQ=255) CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg > 1:18584520‑M1/1‑67 (MQ=255) CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg > 1:2330318‑M1/1‑67 (MQ=255) CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGgt < 1:24295537‑M1/68‑1 (MQ=255) CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGgt > 1:28245838‑M1/1‑68 (MQ=255) CGGACTGGTTATCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGgt > 1:8536175‑M1/1‑67 (MQ=255) CGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGgt > 1:21191295‑M1/1‑67 (MQ=255) GACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTa < 1:484976‑M1/68‑1 (MQ=255) ACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAg < 1:24135650‑M1/68‑1 (MQ=255) ACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAg < 1:28789653‑M1/68‑1 (MQ=255) CTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAg < 1:6449659‑M1/67‑1 (MQ=255) ttaccggtatctacgctaaccagtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGa < 1:558660‑M2/34‑1 (MQ=255) tAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAATCCGGTGAACAGGTGTAGGCGGa < 1:14304626/67‑1 (MQ=255) tAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGaa > 1:525884/1‑68 (MQ=255) tAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGa < 1:20548302/67‑1 (MQ=255) tAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGa < 1:26037071/67‑1 (MQ=255) tAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGa < 1:17521479/67‑1 (MQ=255) tAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGa < 1:2516289/67‑1 (MQ=255) gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa > 1:26239156/1‑68 (MQ=255) gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa > 1:22716330/1‑68 (MQ=255) gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa > 1:3529616/1‑68 (MQ=255) gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa > 1:3074920/1‑68 (MQ=255) gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa > 1:17188557/1‑68 (MQ=255) gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa > 1:10653872/1‑68 (MQ=255) gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa > 1:1104338/1‑68 (MQ=255) gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa > 1:12356809/1‑68 (MQ=255) gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa > 1:19239886/1‑68 (MQ=255) gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa > 1:15674411/1‑68 (MQ=255) gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa > 1:1980720/1‑68 (MQ=255) gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa > 1:14537470/1‑68 (MQ=255) tAGATACCGGTAAATAGTCCGGCCCGTGCACGCGTACAATCCGGTGAACAGGTGTAGGCGGAATTaaa > 1:8849219/1‑68 (MQ=255) aGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAg < 1:23113763/68‑1 (MQ=255) aTACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCg > 1:13781499/1‑68 (MQ=255) aTACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCg > 1:23835367/1‑68 (MQ=255) aTACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGCTGAACAGGTGTAGGCGGAATTAAAGCg > 1:13251152/1‑68 (MQ=255) aCCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGaa > 1:1605473/1‑68 (MQ=255) gTAAATAGTCCGGCCCGTGCAGGCGTACACACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATa > 1:25346987/1‑66 (MQ=255) gTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATa > 1:14893005/1‑66 (MQ=255) gTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATa > 1:7456653/1‑66 (MQ=255) tAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATAcc < 1:27569793/67‑1 (MQ=255) aTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc > 1:27805689/1‑68 (MQ=255) aTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc > 1:23471824/1‑68 (MQ=255) aTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc > 1:18937/1‑68 (MQ=255) aTAGTCCGGCCAGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATCCCTTcc > 1:25882894/1‑68 (MQ=255) tAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc > 1:27990210/1‑67 (MQ=255) agtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccg > 1:13599446‑M2/14‑67 (MQ=255) agtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccg > 1:2661647‑M2/14‑67 (MQ=255) agtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGAGGAATTAAAGCGAATACCTTccg > 1:18735467‑M2/14‑67 (MQ=255) ccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccgccg > 1:1220184‑M2/11‑67 (MQ=255) ccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccgccg > 1:25735158‑M2/11‑67 (MQ=255) ccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccgcc < 1:28474572‑M2/56‑1 (MQ=255) ccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccgcc < 1:11876130‑M2/56‑1 (MQ=255) ccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccgcc < 1:21877331‑M2/56‑1 (MQ=255) cccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAg > 1:26840233‑M2/7‑67 (MQ=255) cccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAg > 1:16492492‑M2/7‑67 (MQ=255) cccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAg > 1:2735843‑M2/7‑67 (MQ=255) cccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAg > 1:17887480‑M2/7‑67 (MQ=255) cccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCAGCCGCCAg > 1:29195469‑M2/7‑67 (MQ=255) ccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGAc < 1:22449952‑M2/63‑1 (MQ=255) cgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACt < 1:24675533‑M2/64‑1 (MQ=255) cgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACt < 1:2289036‑M2/64‑1 (MQ=255) cgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACt < 1:10526343‑M2/64‑1 (MQ=255) gtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTa < 1:9666462‑M2/65‑1 (MQ=255) gtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTa < 1:6012297‑M2/65‑1 (MQ=255) gtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTa < 1:20179185‑M2/65‑1 (MQ=255) gtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTa < 1:10414010‑M2/65‑1 (MQ=255) gCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATc < 1:7637070‑M2/67‑1 (MQ=255) gCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATc > 1:7240572‑M2/2‑68 (MQ=255) gCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATc < 1:8271581‑M2/67‑1 (MQ=255) gCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATc < 1:11386360‑M2/67‑1 (MQ=255) gCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATc < 1:9378710‑M2/67‑1 (MQ=255) | CGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATCA > CP009273/3851537‑3851669 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |