| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4321902 = | 463 (1.310) | 17 (0.060) | 9/92 | NT | 5.2% | intergenic (+81/‑31) | proP/pmrR | proline/glycine betaine transporter/putative membrane‑bound BasS regulator |
| ? | CP009273 | 4321930 = | 242 (0.830) | intergenic (+109/‑3) | proP/pmrR | proline/glycine betaine transporter/putative membrane‑bound BasS regulator | |||||
Only 100 of 665 total aligned reads displayed.
CTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGT > CP009273/4321837‑4321969 | cTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATAct < 1:26471492/68‑1 (MQ=255)cTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATAc > 1:22494654/1‑67 (MQ=255)aagctgctgaccaccagcacgctgaacacggtagttaaactttcataaacacggtttttcattgcAc > 1:24005750‑M1/66‑67 (MQ=255)aagctgctgaccaccagcacgctgaacacggtagttaaactttcataaacacggtttttcattgcAc > 1:769433‑M1/66‑67 (MQ=255) gctgctgaccaccagcacgctgaacacggtagttaaactttcataaacacggtttttcattgcActct > 1:29211194‑M1/64‑68 (MQ=255) gctgctgaccaccagcacgctgaacacggtagttaaactttcataaacacggtttttcattgcActc < 1:3116939‑M1/4‑1 (MQ=255) tgtgACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATActct > 1:17774593/1‑66 (MQ=255) tgctgaccacctgcacgctgaacacggtagttaaactttcataaacacggtttttcattgcActct > 1:9811745‑M1/62‑66 (MQ=255) tgctgaccaccagcacgctgaacacggtagttaaactttcataaacacggtttttcattgcActct > 1:6075719‑M1/62‑66 (MQ=255) tgctgaccaccagcacgctgaacacggtagttaaactttcataaacacggtttttcattgcActct > 1:2330481‑M1/62‑66 (MQ=255) tgctgaccaccagcacgctgaacacggtagttaaactttcataaacacggtttttcattgcACTctcc > 1:22411168‑M1/62‑68 (MQ=255) gtgACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTctcct < 1:4047853/68‑1 (MQ=255) gtgACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTctcc > 1:18114889/1‑67 (MQ=255) gtgACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTctcc > 1:10448198/1‑67 (MQ=255) tgaccaccagcacgctgaacacggtagttaaactttcataaacacggtttttcattgcACTCtcctcc > 1:7397630‑M1/59‑68 (MQ=255) tgaccaccagcacgctgaacacggtagttaaactttcataaacacggtttttcattgcACTCtcctcc > 1:14208512‑M1/59‑68 (MQ=255) tgaccaccagcacgctgaacacggtagttaaactttcataaacacggtttttcattgcACTCtcctcc > 1:14843585‑M1/59‑68 (MQ=255) cGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAg > 1:9081603/1‑68 (MQ=255) cGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCAATTAATCTCTGACGAGCATACTCTCCTCCAg > 1:8694595/1‑68 (MQ=255) gCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAgg > 1:5266202/1‑68 (MQ=255) gCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAgg < 1:22781754/68‑1 (MQ=255) gCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAgg > 1:13393762/1‑68 (MQ=255) gTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTa < 1:21251998/68‑1 (MQ=255) cTTATCAGGCCAATTGCACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAc < 1:7077703/68‑1 (MQ=255) cTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAc < 1:21801541/68‑1 (MQ=255) cTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAc < 1:18344664/68‑1 (MQ=255) cTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAc < 1:10556465/68‑1 (MQ=255) cTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAc > 1:8847213/1‑68 (MQ=255) cAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTTAGggagg > 1:15971700/1‑68 (MQ=255) cAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACggagg > 1:19575746/1‑68 (MQ=255) cAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACggagg > 1:8057437/1‑68 (MQ=255) cAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACggagg > 1:6404417/1‑68 (MQ=255) cAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACggagg > 1:13550068/1‑68 (MQ=255) cAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACggagg > 1:20786010/1‑68 (MQ=255) cAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACggagg > 1:14727987/1‑68 (MQ=255) cAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACggagg > 1:22929261/1‑68 (MQ=255) cAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACggagg > 1:19876534/1‑68 (MQ=255) cAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACggagg > 1:27279573/1‑68 (MQ=255) cAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACggagg > 1:19196316/1‑68 (MQ=255) cAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACggagg > 1:15103140/1‑68 (MQ=255) cAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACggagg > 1:2854197/1‑68 (MQ=255) cAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACggagg > 1:2819139/1‑68 (MQ=255) cAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACggagg > 1:24253229/1‑68 (MQ=255) ccAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGgaggag < 1:23174350/66‑1 (MQ=255) ccAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGgaggag < 1:9377911/66‑1 (MQ=255) ccAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGgaggag < 1:20360278/66‑1 (MQ=255) cAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGagag < 1:15633711/67‑1 (MQ=255) cAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGt < 1:17082759/68‑1 (MQ=255) cAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGt < 1:4649041/68‑1 (MQ=255) cAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGt < 1:16421046/68‑1 (MQ=255) cAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGt < 1:3234092/68‑1 (MQ=255) cAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGt < 1:652128/68‑1 (MQ=255) cAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCACCTCCAGGTTAACGGAGGAGAGt < 1:28974192/68‑1 (MQ=255) acacggtagttaaactttcataaacacggtttttcattgcACTCTCCTCCAGGTTAACGGAGGAGAGt < 1:4378791‑M1/28‑1 (MQ=255) aaTTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTg < 1:3721485/68‑1 (MQ=255) aTTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGc < 1:11910285/68‑1 (MQ=255) tGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCaa > 1:27625393/1‑68 (MQ=255) tGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCaa > 1:1277983/1‑68 (MQ=255) gAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAAt < 1:11465895/68‑1 (MQ=255) gAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAAt < 1:12962234/68‑1 (MQ=255) gAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAAt < 1:17371749/68‑1 (MQ=255) aCTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGa > 1:8176071/1‑68 (MQ=255) aCTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGGGCAATGa > 1:26140142/1‑68 (MQ=255) tAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAAc < 1:10937620/68‑1 (MQ=255) ggTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCgt > 1:15408093/1‑68 (MQ=255) ggTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCgt > 1:14429919/1‑68 (MQ=255) ggTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCgt > 1:587246/1‑68 (MQ=255) ggTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCgt > 1:24494294/1‑68 (MQ=255) ggTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCgt > 1:18923454/1‑68 (MQ=255) ttCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCgtgt > 1:11266486/1‑68 (MQ=255) ttCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCgtgt > 1:23612916/1‑68 (MQ=255) ttCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCgtgt > 1:5034008/1‑68 (MQ=255) ttCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCgt < 1:22194491/66‑1 (MQ=255) tCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCgtgt < 1:25759997/67‑1 (MQ=255) tCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCgtgt < 1:25150097/67‑1 (MQ=255) tCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCgtgt < 1:11693144/67‑1 (MQ=255) ttAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATg > 1:353017/1‑68 (MQ=255) tAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGa > 1:5590550/1‑68 (MQ=255) tctcTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAg > 1:6886323/1‑68 (MQ=255) tctcTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAg > 1:9536882/1‑68 (MQ=255) tctcTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAg > 1:20126867/1‑68 (MQ=255) tctcTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAg < 1:12179877/68‑1 (MQ=255) tctcTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAg > 1:16633273/1‑68 (MQ=255) ctctGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGt < 1:10299909/68‑1 (MQ=255) ctctGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGt < 1:26904566/68‑1 (MQ=255) tctGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCTTGTTTATTAAAGtt > 1:21477276/1‑68 (MQ=255) tctGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGtt > 1:25046585/1‑68 (MQ=255) tctGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGtt < 1:8458504/68‑1 (MQ=255) tctGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGtt < 1:24705872/68‑1 (MQ=255) tctGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGtt > 1:10009224/1‑68 (MQ=255) tctGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGtt > 1:21006146/1‑68 (MQ=255) tGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTa < 1:13881115/68‑1 (MQ=255) tGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTa < 1:28750991/68‑1 (MQ=255) cgcgCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACt > 1:12557607/1‑68 (MQ=255) cgcgCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACt > 1:26041609/1‑68 (MQ=255) gcATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTAcc > 1:18688377/1‑68 (MQ=255) gcATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTAc < 1:14492659/67‑1 (MQ=255) gcATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTAc < 1:28315787/67‑1 (MQ=255) gcATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTAc < 1:25411590/67‑1 (MQ=255) gcATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGCGTTTATGAAAGTTTAACTAc < 1:17507839/67‑1 (MQ=255) | CTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGT > CP009273/4321837‑4321969 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |