| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4321902 = | 463 (1.310) | 17 (0.060) | 9/92 | NT | 5.2% | intergenic (+81/‑31) | proP/pmrR | proline/glycine betaine transporter/putative membrane‑bound BasS regulator |
| ? | CP009273 | 4321930 = | 242 (0.830) | intergenic (+109/‑3) | proP/pmrR | proline/glycine betaine transporter/putative membrane‑bound BasS regulator | |||||
Only 100 of 535 total aligned reads displayed.
AATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCT > CP009273/4321863‑4321997 | aaTTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTg < 1:3721485/68‑1 (MQ=255) acggtagttaaactttcataaacacggtttttcattgcACTCTCCTCCAGGTTAACGGAGGAGAGTGc < 1:18250073‑M1/30‑1 (MQ=255) tGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCaa > 1:6221841/1‑68 (MQ=255) aCTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGa > 1:6566918/1‑68 (MQ=255) aCTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGa > 1:8176071/1‑68 (MQ=255) tctTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGaaa < 1:1101915/68‑1 (MQ=255) ggTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGATGACAGTGCAATGAAAACCCgt > 1:14263043/1‑68 (MQ=255) ggTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCgt > 1:15462394/1‑68 (MQ=255) ggTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCgt > 1:8378156/1‑68 (MQ=255) ggTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCgt > 1:14935074/1‑68 (MQ=255) ggTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCgt > 1:24494294/1‑68 (MQ=255) ggTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAAACgt > 1:23293429/1‑68 (MQ=255) gTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCgtg > 1:12482990/1‑68 (MQ=255) gTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCgtg > 1:3344785/1‑68 (MQ=255) ttCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCgtgt > 1:10437408/1‑68 (MQ=255) ttCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCgtgt > 1:23612916/1‑68 (MQ=255) ttCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCgtgt > 1:24697035/1‑68 (MQ=255) cACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGttt < 1:9745448/68‑1 (MQ=255) aCTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTa < 1:20309885/68‑1 (MQ=255) ttAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATg > 1:9151715/1‑68 (MQ=255) ttAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATg < 1:20161314/68‑1 (MQ=255) tctcTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAg < 1:26282121/68‑1 (MQ=255) tctcTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAg > 1:24230105/1‑68 (MQ=255) tctcTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAg > 1:14837782/1‑68 (MQ=255) tctcTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAg < 1:29232672/68‑1 (MQ=255) tctcTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAg > 1:6886323/1‑68 (MQ=255) ctctGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGt < 1:26904566/68‑1 (MQ=255) ctctGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGt < 1:10299909/68‑1 (MQ=255) tctGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGtt > 1:10009224/1‑68 (MQ=255) tctGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGtt < 1:11530449/68‑1 (MQ=255) tctGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGtt < 1:4015888/68‑1 (MQ=255) tctGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGtt > 1:22262129/1‑68 (MQ=255) tctGACGCGCATACTCTCCTCCAGGGTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGtt < 1:2093725/68‑1 (MQ=255) tGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTa < 1:27184221/68‑1 (MQ=255) gACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTa > 1:10794833/1‑67 (MQ=255) cgcgCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACt < 1:12050969/68‑1 (MQ=255) cgcgCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACt > 1:12706099/1‑68 (MQ=255) attgcactcacctccgttaacctggaggagagtGCAATGAAAAACCGTGTTTATGAAAGTTTAACTAc < 1:8584625‑M2/35‑1 (MQ=255) gcATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTAcc > 1:18688377/1‑68 (MQ=255) gcATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTAc < 1:17142377/67‑1 (MQ=255) gcATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTAc < 1:25411590/67‑1 (MQ=255) gcATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTAc < 1:21070862/67‑1 (MQ=255) ACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCttgt < 1:14504315‑M1/68‑1 (MQ=255) ACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCgtgt < 1:2189252‑M1/68‑1 (MQ=255) ACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCgtgt < 1:25946707‑M1/68‑1 (MQ=255) ACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCgtgt < 1:12924115‑M1/68‑1 (MQ=255) CTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGtt > 1:28810338‑M1/1‑68 (MQ=255) TCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTc < 1:26458693‑M1/68‑1 (MQ=255) TCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTc > 1:8939172‑M1/1‑68 (MQ=255) TCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTc < 1:22550784‑M1/68‑1 (MQ=255) TCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTc < 1:16458168‑M1/68‑1 (MQ=255) TCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTc < 1:18832348‑M1/68‑1 (MQ=255) TCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCa < 1:13533760‑M1/67‑1 (MQ=255) TCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCa < 1:19678666‑M1/67‑1 (MQ=255) TCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAg > 1:14047703‑M1/1‑68 (MQ=255) cctccgtaaacctggaggagagtGCAATTAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGc < 1:4143914‑M2/45‑1 (MQ=255) CCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGc < 1:15760758‑M1/68‑1 (MQ=255) CCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGc > 1:27013745‑M1/1‑68 (MQ=255) CTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCg < 1:2851749‑M1/68‑1 (MQ=255) TCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGt < 1:19101075‑M1/68‑1 (MQ=255) TCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGt > 1:22066747‑M1/1‑68 (MQ=255) CCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGt < 1:279367‑M1/67‑1 (MQ=255) CCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGt < 1:6418815‑M1/67‑1 (MQ=255) CCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGt < 1:25713351‑M1/67‑1 (MQ=255) CCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGt < 1:7101287‑M1/67‑1 (MQ=255) CCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGt < 1:7859802‑M1/67‑1 (MQ=255) CCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGt < 1:11283208‑M1/67‑1 (MQ=255) CCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGt < 1:11849789‑M1/67‑1 (MQ=255) CCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGt < 1:1778777‑M1/67‑1 (MQ=255) CCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTg > 1:16111729‑M1/1‑68 (MQ=255) gTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCtgg > 1:21410944/1‑68 (MQ=255) gTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCtgg > 1:24901956/1‑68 (MQ=255) gTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCtgg > 1:27632163/1‑68 (MQ=255) gTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCtgg > 1:13160861/1‑68 (MQ=255) gTTAACGGAGGAGAGTGCAAAGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCtgg > 1:14723428/1‑68 (MQ=255) ttAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCtggt > 1:5094133/1‑68 (MQ=255) tAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCtggt < 1:26079123/67‑1 (MQ=255) ggaggagagtGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTca > 1:22791155‑M2/11‑68 (MQ=255) ggaggagagtGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTca > 1:5608551‑M2/11‑68 (MQ=255) ggaggagagtGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTca < 1:23143219‑M2/58‑1 (MQ=255) ggagagtGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTcagca > 1:16919150‑M2/8‑68 (MQ=255) ggagagtGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTcagca > 1:13427445‑M2/8‑68 (MQ=255) gagagtGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTcagca > 1:23771900‑M2/7‑67 (MQ=255) agagtGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTcagcag < 1:4680572‑M2/62‑1 (MQ=255) agagtGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTcagca > 1:20795893‑M2/6‑66 (MQ=255) agagtGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTcagca > 1:17457916‑M2/6‑66 (MQ=255) agagtGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTcagca > 1:21592020‑M2/6‑66 (MQ=255) agagtGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTcagca > 1:22433346‑M2/6‑66 (MQ=255) agagtGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTcagca > 1:16552433‑M2/6‑66 (MQ=255) agagtGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTcagca > 1:7491789‑M2/6‑66 (MQ=255) agagtGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTcagca > 1:25141016‑M2/6‑66 (MQ=255) agagtGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTcagca > 1:13902340‑M2/6‑66 (MQ=255) agagtGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTcagca > 1:28204288‑M2/6‑66 (MQ=255) agagtGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTcagca > 1:29167590‑M2/6‑66 (MQ=255) agagtGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTcagca > 1:19408630‑M2/6‑66 (MQ=255) gagtGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCagcagc < 1:3116939‑M2/63‑1 (MQ=255) gagtGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCagcagc < 1:9458576‑M2/63‑1 (MQ=255) gagtGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCt > 1:596821‑M2/5‑68 (MQ=255) gCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGctttct < 1:14451788/68‑1 (MQ=255) gCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGctttct < 1:4391024/68‑1 (MQ=255) | AATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCT > CP009273/4321863‑4321997 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |