New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 725679	NA (NA)	9 (0.030)	8/100	NT	NA	coding (641/4194 nt)	rhsC	Rhs family putative polymorphic toxin
	?	CP009273	= 725702	NA (NA)					coding (664/4194 nt)	rhsC	Rhs family putative polymorphic toxin

ACAGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTC  >  CP009273/725695‑725768        |                                                                   acaGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCg        >  1:18249395/1‑68 (MQ=31) acaGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCg        >  1:7672151/1‑68 (MQ=31) acaGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCg        >  1:24189558/1‑68 (MQ=31) acaGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCg        >  1:17155456/1‑68 (MQ=31) acaGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCg        >  1:30925/1‑68 (MQ=31)  caGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCgg       >  1:11291954/1‑68 (MQ=33)  caGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCgg       >  1:6494108/1‑68 (MQ=33)   aGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCgg       >  1:11994583/1‑67 (MQ=33)   aGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCgg       >  1:15190926/1‑67 (MQ=33)   aGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCgg       >  1:15258535/1‑67 (MQ=33)   aGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCgg       >  1:4314940/1‑67 (MQ=33)    gACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGc     >  1:5909121/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:2265695/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:19604563/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:20773883/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:27917914/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:3003111/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:29201763/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:26134613/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:27061623/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:27566231/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:16322145/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:1479441/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:14059216/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:13780854/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:6739603/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:6772562/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:12348020/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:11001981/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCCCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:14835529/1‑68 (MQ=25)      cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCggg      <  1:24585771/65‑1 (MQ=35)      cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCggg      <  1:27001818/65‑1 (MQ=35)      cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:4330621/1‑67 (MQ=35)      cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:6495758/1‑67 (MQ=35)      cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:28604533/1‑67 (MQ=35)      cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:7795337/1‑67 (MQ=35)      cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:23912167/1‑67 (MQ=35)      cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    <  1:21048171/67‑1 (MQ=35)      cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:17446827/1‑67 (MQ=35)      cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    <  1:2783864/67‑1 (MQ=35)      cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:16832411/1‑67 (MQ=35)       gTTCCACCGCGAAGCCGCCGGTGAATTCCGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:2922114/1‑68 (MQ=25)       gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGTCGGGCGt   >  1:2119351/1‑67 (MQ=25)       gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:17262246/1‑68 (MQ=35)       gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:10361904/1‑68 (MQ=35)       gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:12465535/1‑68 (MQ=35)       gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:7412014/1‑68 (MQ=35)       gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:12808284/1‑68 (MQ=35)       gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:13188371/1‑68 (MQ=35)       gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:6701777/1‑68 (MQ=35)       gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:16946706/1‑68 (MQ=35)       gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:22876183/1‑68 (MQ=35)       gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:29083333/1‑68 (MQ=35)       gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCAACGGCGTGACGGATGGTGCCGGGCGTc  >  1:24042051/1‑68 (MQ=25)       gTTCCACCGCGAAGCCGCCGGTGAAATCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:6357068/1‑68 (MQ=25)        |                                                                   ACAGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTC  >  CP009273/725695‑725768

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.