| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1092949 = | NA (NA) | 11 (0.030) | 6/100 | NT | 16.6% | intergenic (+664/+72) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | CP009273 | 1093045 = | 62 (0.180) | noncoding (64/88 nt) | serX | tRNA‑Ser | |||||
Only 100 of 278 total aligned reads displayed.
CGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAAT > CP009273/1092978‑1093112 | acagacgacctcgtacgaaagaacgggcttttttatcgtatattgcacacaccggggggatgagaagc < 1:14010930‑M2/1‑1 (MQ=255)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc < 1:25000275‑M2/1‑1 (MQ=255)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc < 1:28358843‑M2/1‑1 (MQ=255)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc < 1:23177712‑M2/1‑1 (MQ=255)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc < 1:21755129‑M2/1‑1 (MQ=255)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc < 1:8212805‑M2/1‑1 (MQ=255) gAAAATAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc < 1:7078566/68‑1 (MQ=255) gAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc < 1:742117/68‑1 (MQ=40) gAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc < 1:11350736/68‑1 (MQ=40) gAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc < 1:11329267/68‑1 (MQ=40) aagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcc < 1:6393108‑M2/2‑1 (MQ=255) agaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcc > 1:8390616‑M2/66‑67 (MQ=255) agaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcc > 1:19276971‑M2/66‑67 (MQ=255) agaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcc > 1:15015696‑M2/66‑67 (MQ=255) aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc > 1:4329766/1‑67 (MQ=40) aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc > 1:23258552/1‑67 (MQ=40) aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc > 1:17140804/1‑67 (MQ=40) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcaccccccggggggatgagaagcccc > 1:8870144‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccgggtggaagagaagcccc > 1:19494071‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:22697312‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:24136878‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:24421986‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:23369435‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:20587874‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:21606056‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:1005409‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:24560969‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:26871367‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:2721572‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:27284425‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:2821924‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:3879107‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:5009495‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:6548718‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:7591183‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:798258‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:9113596‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:9146368‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:9283028‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:20222344‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:2042029‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:15355395‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:1539354‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:10427799‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:11607666‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:19091148‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:11818066‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:13652751‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:14825835‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:16344814‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:16662942‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagccca > 1:26611372‑M2/65‑67 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcc > 1:23784261‑M2/65‑66 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc > 1:15201432‑M2/65‑65 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttagtatattgcacacaccggggggatgagaagcccc > 1:2736857‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagcacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:16973453‑M2/65‑68 (MQ=255) aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc < 1:3478820/67‑1 (MQ=40) aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc < 1:8187242/67‑1 (MQ=40) aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc < 1:22237034/67‑1 (MQ=40) aagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCg > 1:312353‑M2/64‑68 (MQ=255) aagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCg > 1:23519930‑M2/64‑68 (MQ=255) aagagctcgtacgaaagtacgggcttttttatcgtatattgcacacaccggggggatgagaagCCCCg > 1:15581242‑M2/64‑68 (MQ=255) atagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCg < 1:10207189‑M2/5‑1 (MQ=255) agagctcgtacgaaagtacgggcttttttttcgtctattgcacacaccggggggatgagaagCCCCGa < 1:29010297‑M2/6‑1 (MQ=255) agagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCg < 1:9612544‑M2/5‑1 (MQ=255) agagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCg > 1:9850507‑M2/63‑67 (MQ=255) agagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCg < 1:21301390‑M2/5‑1 (MQ=255) agagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCGa < 1:12455553‑M2/6‑1 (MQ=255) aaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGa < 1:14517095/68‑1 (MQ=40) aGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACg > 1:28126593/1‑68 (MQ=40) cccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt > 1:14653214/1‑68 (MQ=39) cccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt > 1:18273211/1‑68 (MQ=39) cccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt > 1:1985874/1‑68 (MQ=39) cccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt > 1:20984901/1‑68 (MQ=39) ccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt < 1:63076/67‑1 (MQ=37) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:8703077/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:21489606/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:17766469/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:17801143/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:10022562/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:21148613/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:7794106/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:12746352/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:13358831/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:6798417/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:14382170/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:5575566/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:23979334/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:26290700/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGGGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:12144402/68‑1 (MQ=25) cGTACTTTCGTACGAGCTCTTCATTAAATATGGCGGGGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:582937/68‑1 (MQ=255) gTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGcc < 1:28491155/68‑1 (MQ=33) accaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCGATACGTTGc < 1:4695993‑M2/14‑1 (MQ=255) tACTTTCCTACGAGCCCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCg < 1:16872457/68‑1 (MQ=255) aagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCGATACGTTGCCGta < 1:28839499‑M2/18‑1 (MQ=255) agtacgggcttttttttcgtatattgcacacaccggggggatgagaagcc > 1:12510730‑M2/49‑50 (MQ=255) ttttttttcgtatattcccccccccggggggatgagaagCCCCGATACGTTGCCGTATACACACttt < 1:15067235‑M2/28‑1 (MQ=255) aagCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCa > 1:26041618‑M2/4‑68 (MQ=255) CCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAAt > 1:5220942‑M2/1‑68 (MQ=255) CCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAAt < 1:17538152‑M2/68‑1 (MQ=255) | CGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAAT > CP009273/1092978‑1093112 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |