New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3832491 =316 (0.900)16 (0.050) 5/96 NT 6.9% coding (884/924 nt) yicL EamA family inner membrane putative transporter
?CP009273 3832524 = 162 (0.540)coding (917/924 nt) yicL EamA family inner membrane putative transporter

Only 100 of 327 total aligned reads displayed.

TCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCGACTTC  >  CP009273/3832457‑3832591
                                                                   |                                                                   
tCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCa                                                                     >  1:26354291/1‑68 (MQ=255)
tCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCa                                                                     >  1:26483132/1‑68 (MQ=255)
 tggcgcggtgcctggctggtaattctcacttatgccgcgccggacgatttatttttctggcgcggca                                                                     <  1:28170039‑M2/1‑1 (MQ=255)
 cATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCAt                                                                    >  1:15969269/1‑68 (MQ=255)
 cATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCAt                                                                    >  1:21386378/1‑68 (MQ=255)
   tCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATaa                                                                  <  1:24189945/68‑1 (MQ=255)
   tCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATaa                                                                  <  1:13451096/68‑1 (MQ=255)
    cGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAg                                                                 <  1:4100036/68‑1 (MQ=255)
     ggTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGt                                                                <  1:2258030/68‑1 (MQ=255)
     gcggtgcctggctggtaattctcacttatgccgcgccggacgatttatttttctggcgcggcATAAg                                                                 <  1:8475902‑M2/5‑1 (MQ=255)
     gcggtgcctggcgggtaattctcacttatgccgcgccggacgatttatttttctggcgcggcATAAg                                                                 <  1:327046‑M2/5‑1 (MQ=255)
      gTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTg                                                               >  1:5094860/1‑68 (MQ=255)
        gattttgatttCAATTGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTgag                                                             <  1:1289216/68‑1 (MQ=255)
        gattttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTgag                                                             <  1:8207592/68‑1 (MQ=255)
        gattttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTgag                                                             <  1:14899358/68‑1 (MQ=255)
        gattttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTgag                                                             <  1:16932181/68‑1 (MQ=255)
        gattttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTgag                                                             <  1:26210664/68‑1 (MQ=255)
        gattttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTga                                                              <  1:19192514/67‑1 (MQ=255)
        gattttgatttCAATGGATTCACGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTga                                                              <  1:3376978/67‑1 (MQ=255)
         tgcctggctggtaattctcacttatgccgcgccggacgatttatttttctggcgcggcATAAGTgag                                                             <  1:9378595‑M2/9‑1 (MQ=255)
         tgcctggctgggaattctcacttctgccgcgccggacgagttatttttctggcgcggcATAAGTgag                                                             <  1:23594638‑M2/9‑1 (MQ=255)
          ttttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTgaga                                                            <  1:11576552/67‑1 (MQ=255)
          gcctggctggtaattctcacttatgccgcgccggacgatttatttttctggcgcggcATAAGTgaga                                                            <  1:13171242‑M2/10‑1 (MQ=255)
          gcctggctggtaattctcacttatgccgcgccggacgatttatttttctggcgcggcATAAGTgaga                                                            <  1:16383380‑M2/10‑1 (MQ=255)
            ttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAAtt                                                         <  1:11092655/68‑1 (MQ=255)
             tgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAAtt                                                         >  1:9564945/1‑67 (MQ=255)
             tgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAAtt                                                         >  1:14648113/1‑67 (MQ=255)
               gctggtaattctcacttatGCCGGGCCAGAAAAATAAATCGTCCGGCGCGGCTGAAGTGTGAATTAcc                                                      <  1:2109919‑M1/49‑1 (MQ=255)
               gctggtaattctcacttatGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAcc                                                      <  1:19911214‑M1/49‑1 (MQ=255)
               gctggtaattctcacttatGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAc                                                       <  1:18951048‑M1/48‑1 (MQ=255)
                tttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAcca                                                     <  1:10363537/68‑1 (MQ=255)
                tttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAcca                                                     <  1:12762618/68‑1 (MQ=255)
                tttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAcca                                                     >  1:1900190/1‑68 (MQ=255)
                ctggtaattctcacttatgccgcgccggacgatttatttttctggcgcggcATAAGTGA‑AATTAcca                                                     <  1:22713939‑M2/16‑1 (MQ=255)
                 ttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAcca                                                     >  1:21287871/1‑67 (MQ=255)
                 tggtaattctcacttatGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCAGAAGTGGGAATTaccc                                                     <  1:19584014‑M1/50‑2 (MQ=255)
                  tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc                                                   <  1:24910238/68‑1 (MQ=255)
                  tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc                                                   <  1:7907618/68‑1 (MQ=255)
                  tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc                                                   <  1:22069657/68‑1 (MQ=255)
                  tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc                                                   <  1:20683645/68‑1 (MQ=255)
                  tCAATGGATTCCCGGCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc                                                   <  1:8158283/68‑1 (MQ=255)
                  cgtaattctcacttatgccgcgccggacgatttatatttctcgcgcggcATAAGTGAGAATTAccagc                                                   <  1:18737564‑M2/19‑1 (MQ=255)
                     aTGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagccag                                                >  1:5757831/1‑68 (MQ=255)
                      tGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagccagt                                               <  1:1539951/68‑2 (MQ=255)
                       ggATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGc                                              >  1:3122676/1‑68 (MQ=255)
                       ggATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGc                                              >  1:7129805/1‑68 (MQ=255)
                       ggATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGc                                              >  1:11771103/1‑68 (MQ=255)
                       ggATTCCCGTCGCCGCGCCAGAAAAATAAATAGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAgg                                               >  1:19130800/1‑67 (MQ=255)
                         ctcacttatGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCa                                             <  1:775970‑M1/58‑1 (MQ=255)
                         aTTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagccagtcc                                             <  1:2969770/67‑4 (MQ=255)
                          ttCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCAcc                                           <  1:16763364/68‑1 (MQ=255)
                          ttCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCAcc                                           <  1:15112036/68‑1 (MQ=255)
                          tcacttatGCCGCGCCAGAAAATTAAATCGTCCGGCGCGGCATAAGTGAGAATTACCCGCCaggcccg                                           <  1:1415331‑M1/60‑4 (MQ=255)
                           tCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCAcc                                           >  1:6415114/1‑67 (MQ=255)
                            cccGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgc                                         >  1:16356793/1‑68 (MQ=255)
                            cccGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgc                                         >  1:10780865/1‑68 (MQ=255)
                            cccGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgc                                         >  1:4472803/1‑68 (MQ=255)
                            cccGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgc                                         >  1:6206933/1‑68 (MQ=255)
                            cccGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgc                                         <  1:14984499/68‑1 (MQ=255)
                            cccGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgc                                         >  1:17164773/1‑68 (MQ=255)
                             cttatGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCCCcgc                                         <  1:11398977‑M1/62‑1 (MQ=255)
                              cGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgcg                                        >  1:12379368/1‑67 (MQ=255)
                                 cgccgcGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCa                                     >  1:17667496/1‑67 (MQ=255)
                                  GCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCAcc                                   >  1:23511186‑M1/1‑68 (MQ=255)
                                  GCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCAcc                                   <  1:27248400‑M1/68‑1 (MQ=255)
                                  GCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCAcc                                   <  1:18495714‑M1/68‑1 (MQ=255)
                                  GCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCAcc                                   <  1:17384454‑M1/68‑1 (MQ=255)
                                  GCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCAcc                                   <  1:22498946‑M1/68‑1 (MQ=255)
                                    CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGt                                 <  1:29017868‑M1/68‑1 (MQ=255)
                                    CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGt                                 >  1:19708377‑M1/1‑68 (MQ=255)
                                    CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGt                                 >  1:13864525‑M1/1‑68 (MQ=255)
                                    CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGt                                 >  1:11816827‑M1/1‑68 (MQ=255)
                                    CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGt                                 >  1:23857507‑M1/1‑68 (MQ=255)
                                    CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGt                                 <  1:8857950‑M1/68‑1 (MQ=255)
                                    CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGt                                 >  1:12169866‑M1/1‑68 (MQ=255)
                                    CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGt                                 <  1:21782566‑M1/68‑1 (MQ=255)
                                       GCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTaa                              >  1:1394152‑M1/1‑68 (MQ=255)
                                       GCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTaa                              >  1:10940499‑M1/1‑68 (MQ=255)
                                       GCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTa                               >  1:18312392‑M1/1‑67 (MQ=255)
                                             aaaaTAAATCGTCCGTCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCAGCGTTAAAAATgg                        <  1:25412537/68‑1 (MQ=255)
                                               aataaatCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGtt                      >  1:26791626/1‑68 (MQ=255)
                                                    atCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTg                  >  1:28036235/1‑67 (MQ=255)
                                                    atCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACAGCGCCACCGTTAAAAATGGTTTCTg                  >  1:20208023/1‑67 (MQ=255)
                                                      cGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGcc                >  1:28755970/1‑67 (MQ=255)
                                                      cGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGcc                >  1:23118366/1‑67 (MQ=255)
                                                      cGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCg               <  1:13357978/68‑1 (MQ=255)
                                                      cGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCg               <  1:17991851/68‑1 (MQ=255)
                                                       gTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGc              <  1:19923802/68‑1 (MQ=255)
                                                       gTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGc              <  1:1192512/68‑1 (MQ=255)
                                                         ccGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCt             <  1:15678859/67‑1 (MQ=255)
                                                         ccGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCt             <  1:8401786/67‑1 (MQ=255)
                                                         ccGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCt             <  1:18171187/67‑1 (MQ=255)
                                                              gcggcATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGc        >  1:4261789‑M2/6‑67 (MQ=255)
                                                              gcggcATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCg       >  1:27397899‑M2/6‑68 (MQ=255)
                                                              gcggcATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCg       >  1:7387100‑M2/6‑68 (MQ=255)
                                                              gcggcATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCg       >  1:22202642‑M2/6‑68 (MQ=255)
                                                              gcggcATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCg       >  1:21890474‑M2/6‑68 (MQ=255)
                                                              gcggcATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCg       >  1:17427104‑M2/6‑68 (MQ=255)
                                                                ggcATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCGa      <  1:25777718‑M2/64‑1 (MQ=255)
                                                                  cATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCGACt    <  1:24370115‑M2/66‑1 (MQ=255)
                                                                   |                                                                   
TCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCGACTTC  >  CP009273/3832457‑3832591

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.