| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4190073 = | 457 (1.100) | 46 (0.140) | 16/90 | NT | 11.3% | intergenic (+51/‑136) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
| ? | CP009273 | 4190110 = | 353 (1.060) | intergenic (+88/‑99) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit | |||||
Only 100 of 227 total aligned reads displayed.
ATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4190148‑4190073‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTT > CP009273/4190110‑4190176 ATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGATCAGACGGG > 1:3149670/1‑68ATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGG > 1:32646376/1‑68ATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGG < 1:21550775/68‑1ATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGG < 1:20180850/68‑1ATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGG > 1:1966380/1‑68ATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGG > 1:18758751/1‑68ATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGG > 1:25557345/1‑68ATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGG > 1:26424305/1‑68ATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGG < 1:26958099/68‑1ATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGG > 1:28969166/1‑68ATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGG < 1:30334650/68‑1 TAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGG < 1:16655398/68‑1 TAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGG < 1:10123512/68‑1 AGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGG < 1:21788670/68‑1 AGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGG < 1:21888915/68‑1 AGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGG < 1:15437090/68‑1 AGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGG > 1:33563618/1‑68 AGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGG > 1:11203901/1‑68 ACTCTCCTGCATACCCGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGC < 1:30341944/67‑1 ACTCTCCTGCATACACGCACCGATAGGCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG > 1:8640207/1‑68 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCATATGTAGACCAGACGGGGGGCG > 1:11129621/1‑68 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG > 1:19532698/1‑68 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG > 1:19491893/1‑68 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG > 1:19051456/1‑68 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG > 1:4297724/1‑68 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG > 1:6093446/1‑68 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG > 1:25251370/1‑68 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG > 1:32992392/1‑68 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG > 1:12226828/1‑68 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG > 1:15041996/1‑68 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGC < 1:22243681/67‑1 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGC < 1:30079437/67‑1 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCACCCCCCAAATGTAGACCAGACGGGGGGCG > 1:12956183/1‑68 ACTCTCCTGCATACACGCACCGATAGCCAC‑TTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGA > 1:24218611/1‑68 CTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGA > 1:7009744/1‑68 TCTCCTGCATACACGCCCCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAA < 1:16849071/68‑1 TCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAA < 1:3941705/68‑1 TCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAA < 1:29482418/68‑1 TCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAA > 1:9012912/1‑68 TCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAA < 1:12890403/68‑1 TCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAA < 1:14923585/68‑1 ATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTCGACCAGACGGGGGGCGAAAAAAAGT < 1:28472592/67‑1 ATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGT < 1:7627203/67‑1 TACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGG < 1:23732817/68‑1 ACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTA < 1:359963/68‑1 ACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCG < 1:5604194/67‑1 ACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCG < 1:26783805/67‑1 cctATAGCCCCTTTTTTTCGCCCCCCAAATGTACACCCGACGGGGGGCTAAAAAAAGTGGCTATCGGT < 1:11413507/65‑1 CCGATAGCCACTTTTTTTCGCCCCCCAAATGTACACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGT < 1:18581034/68‑1 CCGATAGCCACTTTTTTTCGCCCCCCAAATGTACACCACACGGGGGGCGAAAAAAAGTGGCTATCGGT < 1:18000343/68‑1 caaAGCCACTTTTTTTCGCCCCCCAAATGTAGCCCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGC < 1:31721663/65‑1 ATAGCCACTTATCTTCGCCCCCCAAACGTAGACCACACGGGGGGCGAAAAAAAGTGGCTATCGGTGCG < 1:13943349/68‑1 aAGCCACTTTTTTTCGCCCCCCAAAAGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCG < 1:33391001/66‑1 TAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCG < 1:21395605/67‑1 TAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCG < 1:25380184/67‑1 TAGCCACTTTATTTCGCCCCCCAACGGCAGCCCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCG < 1:2328484/67‑1 TAGCCACTTATTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCG < 1:4720470/67‑1 AGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTG < 1:13585942/68‑1 CACTTTTTTTCGCCCCCCAAATGTCGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAT < 1:32159691/68‑1 CACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAT < 1:34078940/68‑1 CACTTTTTTCCGCCCCCCAAATCAAGACCAGCCGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAT < 1:27413010/68‑1 CACTTTATTTCCCCCCCCAAATGTACACCACCCGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAT < 1:5686834/68‑1 CACATTTTTTCGCCCCCCAATTGTAGACCACACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGT < 1:6457087/66‑1 CTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGC < 1:25996370/68‑1 CGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGT < 1:1980567/68‑1 CGCCCCCCAAATGTACACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGT < 1:7376226/68‑1 GTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCA > 1:17229506/1‑68 GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC > 1:11539583/1‑66 GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC > 1:32709259/1‑66 GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC > 1:32900183/1‑66 GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC > 1:30656640/1‑66 GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC > 1:29833017/1‑66 GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC > 1:27780855/1‑66 GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC > 1:17087692/1‑66 GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC > 1:6710258/1‑66 GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC > 1:20142572/1‑66 GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC > 1:20796122/1‑66 GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC < 1:25334380/67‑1 GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC > 1:28238944/1‑67 GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC > 1:24404417/1‑67 GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC > 1:1640085/1‑67 GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC > 1:17889054/1‑67 GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTACTATTCTGGCATTTCCGTCGCAC > 1:29566363/1‑67 GGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACT < 1:6417557/67‑1 GGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCG > 1:8379599/1‑68 GAAAAAAAGTGGCTCTCGGTGCGTGTATGCATGAGAGTGCTATTCTAGCATTTCCGTCGCACTCGAT < 1:23854856/67‑1 GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT < 1:10267792/67‑1 GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT < 1:10596412/67‑1 GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT < 1:7941382/67‑1 GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT < 1:13383996/67‑1 GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT < 1:16477989/67‑1 GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT < 1:17542957/67‑1 GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT < 1:18182134/67‑1 GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT < 1:1913501/67‑1 GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT < 1:20583938/67‑1 GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT < 1:5199330/67‑1 GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT < 1:28639028/67‑1 GAAAAAAAGTGGCTATCGGTGCGGGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT < 1:27727261/67‑1 AAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCT < 1:23224070/68‑1 AAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTT > 1:31911747/1‑68 ATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4190148‑4190073‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTT > CP009273/4190110‑4190176 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |