| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4190073 = | 457 (1.100) | 46 (0.140) | 16/90 | NT | 11.3% | intergenic (+51/‑136) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
| ? | CP009273 | 4190110 = | 353 (1.060) | intergenic (+88/‑99) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit | |||||
Only 100 of 668 total aligned reads displayed.
CGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTA > CP009273/4190043‑4190177 | cGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGaaaa > 1:1887465/1‑68 (MQ=255) gcatacacgcaccgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAg < 1:16950151‑M1/42‑1 (MQ=255) atacacgcaccgatagccactttttttcgccccccaaatgtcgaccagacggggggcgaaaAAAAGt < 1:28472592‑M2/6‑1 (MQ=255) atacacgcaccgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTg < 1:13811804‑M1/44‑1 (MQ=255) atacacgcaccgatagccacttttTTTCGCCCCCCGTCGGGTCTACATTTGGGGGGCGAAAAAAAGTg < 1:33922965‑M1/44‑1 (MQ=255) tttGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTgg < 1:14157562/68‑1 (MQ=255) ttGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGc < 1:31964993/68‑1 (MQ=255) tGTCGTCCCTGGCGCCTTCCCTTTCGCCCCCCGGCTCGTCTACATTTGGGGGGCGAAAAAAAGTGGCt < 1:9455627/68‑1 (MQ=255) tGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCt < 1:8822391/68‑1 (MQ=255) cgcaccgatagccacttttTTTCGCCCCCCGTCTGGGCTGCCGTTGGGGGGCGAAATAAAGTGGCTa < 1:2328484‑M1/48‑1 (MQ=255) cGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATc > 1:33165717/1‑68 (MQ=255) cGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATc > 1:32374575/1‑68 (MQ=255) gTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCg < 1:24386775/68‑1 (MQ=255) gTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCg < 1:16053039/68‑1 (MQ=255) accgatagccacttttTTTAGCCCCCCGTCGGGTGTACATTTGGGGGGCGAAAAAAAGGGGctatagg < 1:11413507‑M1/52‑4 (MQ=255) ccgatagccactttttttcgccccccaaatgtacaccagacggggggcgaaaAAAAGTGGCTATCGGt < 1:18581034‑M2/16‑1 (MQ=255) aCCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGt < 1:19227033/68‑1 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGc > 1:7941333/1‑68 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGc > 1:22152029/1‑68 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGc > 1:10600824/1‑68 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGc > 1:25065015/1‑68 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGc < 1:5615348/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:5240394/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCAGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGGGCg < 1:16494580/68‑1 (MQ=255) tagccactttttttcgccccccaaatgtagaccagacggggggcgaaaAAAAGTGGCTATCGGTGCg < 1:23438476‑M2/19‑1 (MQ=255) ggAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgt < 1:13082802/68‑1 (MQ=255) ggAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgt < 1:11761821/68‑1 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:19100266/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:4657552/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:4770156/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:6776729/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtg < 1:15502448/67‑1 (MQ=255) aGTCTTCCCTTTCGCCCCCAGTCGGGTGTACAGTTGGGGGGCGAAAAAAAGTGGCTATAGGTGCgtgt > 1:33534510/1‑68 (MQ=255) gtcgtcCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgggt < 1:20306311/67‑1 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt < 1:12805032/67‑1 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt < 1:29911284/67‑1 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGGCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt < 1:7358217/67‑1 (MQ=255) gTCTTCCCTTTCG‑CCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:24703676/68‑1 (MQ=255) ccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTa < 1:23732817‑M1/60‑1 (MQ=255) cactttttttcgccccccaaatgtagaccagccggggggtgaaaAAAAGTGGCTATCGGTGCGTGTAt < 1:34218090‑M2/24‑1 (MQ=255) cactttttttcgccccccaaatgtagaccagacgggcggcgaaaAAAAGTGGCTATCGGTGCGTGTAt < 1:17747341‑M2/24‑1 (MQ=255) cacttttttccgccccccaaatcaagaccagccggggggcgaaaAAAAGTGGCTATCGGTGCGTGTAt < 1:27413010‑M2/24‑1 (MQ=255) cacattttttcgccccccaattgtagaccacacggggggcgaaaAAAAGTGGCTATCGGTGCgtgt < 1:6457087‑M2/22‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTCTCGGTGCGTGTAt < 1:30253199/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:31726830/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:22886000/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:9214986/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:23961728/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:3569274/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:31170361/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:5954432/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:30610838/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:25807313/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:28669810/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGGCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:8106300/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGGCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:26710932/67‑1 (MQ=255) acttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:7627203‑M1/61‑1 (MQ=255) ttCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGc < 1:26970280/68‑1 (MQ=255) ttCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGc < 1:20618787/68‑1 (MQ=255) ttCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGc < 1:15132729/68‑1 (MQ=255) tCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAATGTGGCTATCGGTGCGTGTATGCa > 1:18094829/1‑68 (MQ=255) cccTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAg > 1:20094084/1‑68 (MQ=255) cccTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAg > 1:26286698/1‑68 (MQ=255) ccTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAgg < 1:18317418/68‑1 (MQ=255) TTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGgaga < 1:14923585‑M1/68‑1 (MQ=255) TTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGgaga < 1:29482418‑M1/68‑1 (MQ=255) TTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGgaga < 1:16708005‑M1/68‑1 (MQ=255) CGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGt > 1:4297724‑M1/1‑68 (MQ=255) CGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGt > 1:16288315‑M1/1‑68 (MQ=255) CGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGt > 1:6875197‑M1/1‑68 (MQ=255) CGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGt > 1:32932491‑M1/1‑68 (MQ=255) CGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGt > 1:19491893‑M1/1‑68 (MQ=255) CGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGt > 1:22347954‑M1/1‑68 (MQ=255) CGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGt > 1:12226828‑M1/1‑68 (MQ=255) CCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCt > 1:11203901‑M1/1‑68 (MQ=255) CCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTa < 1:10123512‑M1/68‑1 (MQ=255) CCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTAt > 1:17358250‑M1/1‑68 (MQ=255) CCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTAt > 1:28969166‑M1/1‑68 (MQ=255) CCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTAt < 1:21550775‑M1/68‑1 (MQ=255) CCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTAt > 1:28102918‑M1/1‑68 (MQ=255) CCCGTCTGATCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTAt > 1:3149670‑M1/1‑68 (MQ=255) tCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTg > 1:11516088/1‑68 (MQ=255) tACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTc < 1:8407398/68‑1 (MQ=255) aTTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCg > 1:208395/1‑67 (MQ=255) aTTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCg > 1:29678457/1‑67 (MQ=255) aTTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCAATTCTGGCATTTCCg > 1:6265497/1‑67 (MQ=255) tGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGc < 1:25411726/68‑1 (MQ=255) ggggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCa < 1:11042816‑M2/57‑1 (MQ=255) gggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGc > 1:8610144‑M2/11‑66 (MQ=255) gggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGc > 1:5735928‑M2/11‑66 (MQ=255) gggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGc > 1:19734971‑M2/11‑66 (MQ=255) gggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGc > 1:32709259‑M2/11‑66 (MQ=255) ggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAc > 1:21820732‑M2/10‑67 (MQ=255) ggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAc < 1:13417169‑M2/58‑1 (MQ=255) cgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGa < 1:2536481‑M2/62‑1 (MQ=255) gaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAt < 1:2424061‑M2/63‑1 (MQ=255) gaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAt < 1:21905027‑M2/63‑1 (MQ=255) gaaaAAAAGTGGCTATCGGTGCGGGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAt < 1:27727261‑M2/63‑1 (MQ=255) aaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCt < 1:10304876‑M2/66‑1 (MQ=255) aaaaGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTa < 1:3937822/68‑1 (MQ=255) | CGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTA > CP009273/4190043‑4190177 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |