| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4388394 = | 349 (0.840) | 18 (0.050) | 8/100 | NT | 5.9% | coding (1166/1848 nt) | mutL | methyl‑directed mismatch repair protein |
| ? | CP009273 | 4388416 = | 261 (0.700) | coding (1188/1848 nt) | mutL | methyl‑directed mismatch repair protein | |||||
GCGGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4388466‑4388394‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaggCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAATTA > CP009273/4388416‑4388482 GCGGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGG < 1:10521941/68‑1GCGGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGG < 1:9775497/68‑1GCGGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGG < 1:5052442/68‑1GCGGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGG < 1:3732290/68‑1GCGGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGG < 1:13690/68‑1GCGGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGG < 1:27402166/68‑1GCGGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGG < 1:23640113/68‑1GCGGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGG < 1:21356042/68‑1GCGGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGG < 1:18059245/68‑1GCGGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCAGGTAGCCTGGCTGCGCATTCGG < 1:7030544/68‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCC < 1:11111996/68‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCC < 1:587160/68‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCC < 1:5217435/68‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCC < 1:23544265/68‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCC < 1:16174960/68‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCC < 1:11260664/68‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGC < 1:9382601/67‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGC < 1:17392252/67‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGC < 1:13263462/67‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGC < 1:29976410/67‑1 GCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAG > 1:14112088/1‑68 GCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCA < 1:14862896/67‑1 GCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCA < 1:28274985/67‑1 GCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGGTTCTGGTAGCCTGGCTGCGCATTCGGCCAG > 1:3845498/1‑68 CGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGG > 1:17941037/1‑68 CGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGG > 1:8461866/1‑68 CGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGG > 1:11842664/1‑68 gtgTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGG < 1:16389242/64‑1 GTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGG < 1:31105314/67‑1 GTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGCAGCCTGGCTGCGCATTCGGCCAGG < 1:5659217/67‑1 TGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTAC < 1:22505988/68‑1 TGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTAC < 1:22808381/68‑1 AAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCA < 1:25648173/67‑1 TGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACA < 1:25510727/67‑1 TGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACA < 1:25720840/67‑1 TGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACA < 1:1373039/67‑1 GGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGC < 1:22144465/68‑1 GGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGC < 1:29585079/68‑1 GGCGATACACTTCACCTTCCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGC < 1:28659876/68‑1 GCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGC < 1:16519266/67‑1 GCGATACACTTCACCTTGCTGCTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGC < 1:512633/67‑1 TACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGCAAGGT < 1:5298571/68‑1 TACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGCAAGG < 1:23712320/67‑1 TACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCCGCCAGGCTACCAGAAACAGCAAGG < 1:13489183/67‑1 TACACATCACCTTGCTGTTGCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGCAAGG < 1:2908266/67‑1 CACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGCAAGGTGA < 1:453278/68‑1 TTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGCAAGGTGAAGT < 1:8289237/68‑1 TCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGCAAGGTGAAGTG < 1:31171823/68‑1 TCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGCAAGGTGAAGTG < 1:28965601/68‑1 TCACCTTGCTGTTTCGGGGAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGCAAGGTGAAGTG < 1:23606152/68‑1 CTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCC < 1:9087612/36‑1 CCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAA > 1:173651/1‑68 CAGGCTACCAGAAACAGCCAGGTGAAGTGTATCGCCAGCTTTTGCAATCGCCCGCGCCGATGCAAAAA < 1:13140399/68‑1 CAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAACCGCGCGCGCCGCTGCAAAAA > 1:27065236/1‑68 CAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAA < 1:13393021/68‑1 CAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAA > 1:14543436/1‑68 CAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAA < 1:24045031/68‑1 CAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAA < 1:20704716/68‑1 CAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAA < 1:7798457/68‑1 CAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAA < 1:488383/68‑1 CAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAA < 1:15656042/68‑1 CAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAA < 1:33283943/68‑1 GCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAATTA > 1:26779978/1‑68 GCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAATTA > 1:8437129/1‑68 GCGGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4388466‑4388394‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaggCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAATTA > CP009273/4388416‑4388482 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |