| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4388394 = | 349 (0.840) | 18 (0.050) | 8/100 | NT | 5.9% | coding (1166/1848 nt) | mutL | methyl‑directed mismatch repair protein |
| ? | CP009273 | 4388416 = | 261 (0.700) | coding (1188/1848 nt) | mutL | methyl‑directed mismatch repair protein | |||||
Only 100 of 417 total aligned reads displayed.
CGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAATTAA > CP009273/4388349‑4388483 | gcgcTACTCTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCt < 1:2377049/68‑1 (MQ=255) tgcaaaagctggcgatacacttcaccttgctgtttctggtagcctggctgcgcattcggccaggCTAc < 1:22808381‑M2/4‑1 (MQ=255) gcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCCGGCTa > 1:20985469/1‑67 (MQ=255) gcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTa > 1:25910198/1‑67 (MQ=255) gcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTa > 1:31895828/1‑67 (MQ=255) gcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTAc < 1:1813096/68‑1 (MQ=255) gcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTAc < 1:926268/68‑1 (MQ=255) gcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTAc < 1:13149188/68‑1 (MQ=255) gcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTAc < 1:29989097/68‑1 (MQ=255) gcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTAc < 1:14817526/68‑1 (MQ=255) acacTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAg > 1:2765774/1‑68 (MQ=255) aaaagctggcgatacacttcaccttgctgtttctggtagcctggctgcgcattcggccaggCTACCa < 1:25648173‑M2/6‑1 (MQ=255) acTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGGCAGGCTACCAGaa > 1:7502174/1‑68 (MQ=255) acTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGaa > 1:24486985/1‑68 (MQ=255) acTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGaa > 1:21430891/1‑68 (MQ=255) cTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCCGGCTACCAGaa > 1:16094639/1‑67 (MQ=255) ccTGCGCCATCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAAAGCGCAGCCAGGGTACCAGAAACa > 1:33611551/1‑68 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCTGAAACa > 1:15899616/1‑68 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa > 1:29905088/1‑68 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa > 1:13763735/1‑68 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa < 1:25084069/68‑1 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa > 1:32126879/1‑68 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa > 1:17360089/1‑68 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa > 1:1796309/1‑68 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa > 1:6418798/1‑68 (MQ=255) tggcgatacacttcaccttgctgtttctggtagcctggctgcgcattcggccaggCTACCAGAAACa < 1:25510727‑M2/12‑1 (MQ=255) tGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGTAACAGc > 1:26517187/1‑68 (MQ=255) tGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGc > 1:22164965/1‑68 (MQ=255) ggcgatacacttcaccttgctgtttctggtagcctggctgcgcattcggccaggCTACCAGAAACAGc < 1:29585079‑M2/14‑1 (MQ=255) gcgatacacttcaccttgctgtttctggtagcctggctgcgcattcggccaggCTACCAGAAACAGc < 1:16519266‑M2/14‑1 (MQ=255) gcCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGATGCAGCAAg > 1:14911393/1‑68 (MQ=255) gcCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCacg > 1:5387403/1‑66 (MQ=255) gcCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCaa < 1:6051447/67‑1 (MQ=255) gcCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAg > 1:24830566/1‑68 (MQ=255) gcCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAg > 1:2312970/1‑68 (MQ=255) gcCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAg > 1:4982136/1‑68 (MQ=255) gcCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAg > 1:10037217/1‑68 (MQ=255) gcCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAg > 1:18577898/1‑68 (MQ=255) gcCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAg > 1:19247838/1‑68 (MQ=255) gcCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAg > 1:19802595/1‑68 (MQ=255) gcCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAg > 1:8097116/1‑68 (MQ=255) cAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAgg < 1:33213394/67‑1 (MQ=255) cAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAgg < 1:20610724/67‑1 (MQ=255) cAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGt < 1:14197608/68‑1 (MQ=255) cAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGt > 1:483092/1‑68 (MQ=255) aGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTg > 1:15413036/1‑68 (MQ=255) cacttcaccttgctgtttctggtagCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGa < 1:28965601‑M1/43‑1 (MQ=255) aTCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGa < 1:220197/66‑1 (MQ=255) ttcaccttgctgtttctggtagcctggctgcgcattcggccaggCTACCAGAAACAGCAAGGTGAAgt < 1:8289237‑M2/24‑1 (MQ=255) tcaccttgctgtttctggtagCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAgtg < 1:453278‑M1/47‑1 (MQ=255) tcaccttgctgtttcggggagcctggctgcgcattcggccaggCTACCAGAAACAGCAAGGTGAAgtg < 1:23606152‑M2/25‑1 (MQ=255) cAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAgtg < 1:3547271/68‑1 (MQ=255) cAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAgtg < 1:27140542/68‑1 (MQ=255) cAGGCAGTCGTCCGGCGGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAgtg < 1:6598107/68‑1 (MQ=255) tctggtagcctGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTa < 1:31548164‑M1/57‑1 (MQ=255) ggCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTa > 1:3770592/1‑68 (MQ=255) ggCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTa > 1:9509872/1‑68 (MQ=255) gCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTa > 1:8744305/1‑67 (MQ=255) gCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTa > 1:16683568/1‑67 (MQ=255) gCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTa > 1:30763569/1‑67 (MQ=255) ccttgctgtttctggtagCCTGGCCGAATGCGCAGCCAGGCTACCAGCAACAGCAAGGTGATGTGTa < 1:2908266‑M1/49‑1 (MQ=255) aGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATc < 1:32649457/67‑1 (MQ=255) gctgtttctggtagCCTGGCCGAATGCGCAGCCAGGCTACCAGAAGCAGCAAGGTGAAGTGTATCGc < 1:512633‑M1/53‑1 (MQ=255) gctgtttctggtagCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGGAAGGTGAAGTGTATCGcc < 1:28659876‑M1/54‑1 (MQ=255) cgtcCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCg < 1:16737608/65‑1 (MQ=255) cgtcCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCa > 1:3182547/1‑68 (MQ=255) cgtcCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCa > 1:15557862/1‑68 (MQ=255) gtcCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCa > 1:5489501/1‑67 (MQ=255) ccGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCt < 1:22668750/68‑1 (MQ=255) GGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCttt < 1:31262667‑M1/68‑1 (MQ=255) GGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCttt < 1:26824685‑M1/68‑1 (MQ=255) TGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGc < 1:12462005‑M1/68‑1 (MQ=255) TGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGc < 1:11549186‑M1/68‑1 (MQ=255) gtagCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCa < 1:22505988‑M1/64‑1 (MQ=255) ccccTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCaa > 1:30466390/1‑67 (MQ=255) ccccTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCaa > 1:34210577/1‑67 (MQ=255) cccTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAAc > 1:17555058/1‑68 (MQ=255) cccTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAAc > 1:2435513/1‑68 (MQ=255) CCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAAc < 1:31105314‑M1/67‑1 (MQ=255) CCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACg > 1:8461866‑M1/1‑68 (MQ=255) TGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGc < 1:28274985‑M1/67‑1 (MQ=255) GGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAg < 1:9087612‑M1/36‑1 (MQ=255) GGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGccc < 1:11260664‑M1/68‑1 (MQ=255) GGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGccc < 1:16174960‑M1/68‑1 (MQ=255) CCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCcgc < 1:9775497‑M1/68‑1 (MQ=255) CCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCcgc < 1:27402166‑M1/68‑1 (MQ=255) CCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCcgc < 1:13690‑M1/68‑1 (MQ=255) CCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCcgc < 1:10521941‑M1/68‑1 (MQ=255) cGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCcgcg < 1:3899046/68‑1 (MQ=255) cGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCcgc > 1:18287380/1‑67 (MQ=255) tGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGa > 1:20172573/1‑68 (MQ=255) tGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGa > 1:11821367/1‑68 (MQ=255) tGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGa > 1:10657016/1‑68 (MQ=255) tGCGCAGCCAGGCTACCAGAAACAGCAAGGTCAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGa > 1:5686363/1‑68 (MQ=255) gcgcAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGAt > 1:4239670/1‑68 (MQ=255) gcgcAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGAt > 1:29366244/1‑68 (MQ=255) gcgcAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGAt < 1:6912593/68‑1 (MQ=255) caggCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCaaaaa < 1:7798457‑M2/64‑1 (MQ=255) caggCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCaaaaa > 1:14543436‑M2/5‑68 (MQ=255) caggCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCaaaaa < 1:13393021‑M2/64‑1 (MQ=255) | CGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAATTAA > CP009273/4388349‑4388483 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |