| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 173463 | NA (NA) | 7 (0.020) | 7/88 | NT | NA | noncoding (8/19 nt) | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 173466 | NA (NA) | noncoding (11/19 nt) | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 106 total aligned reads displayed.
GTGACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/173385‑173463‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgtgccggataGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTCGC < CP009273/173466‑173400 GTGACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCA < 1:21345922/68‑1 GACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATG < 1:25062049/68‑1 ACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT > 1:27103624/1‑68 ACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT > 1:32541973/1‑68 ACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT > 1:25211359/1‑68 ACCAACACGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT > 1:21349899/1‑68 CCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTG < 1:22677372/68‑1 CCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT > 1:2401417/1‑67 CCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT < 1:30305387/67‑1 CCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT > 1:11256369/1‑67 CCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT > 1:8129626/1‑67 CCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT < 1:615669/67‑1 CCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT > 1:34523737/1‑67 CCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT < 1:12875906/67‑1 CCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT > 1:10479980/1‑67 acaCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:21146889/65‑1 ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:1586154/68‑1 ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:16468059/68‑1 ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:22160843/68‑1 ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:22630701/68‑1 ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:10652571/68‑1 ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:10612199/68‑1 ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG > 1:25406812/1‑68 ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTATTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:27053380/68‑1 CCCGAACGCGAAAAGGACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCGGG < 1:22028870/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:28332472/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:23806432/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:23520899/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:19582200/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:23013140/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:25528176/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:26889647/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:1666771/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:1536272/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG > 1:14696789/1‑68 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG > 1:14019728/1‑68 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG > 1:33792962/1‑68 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG > 1:13499258/1‑68 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG > 1:34494326/1‑68 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:8154208/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:9627930/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:10357155/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:10282159/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTGCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:10331036/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTGCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:11957117/68‑1 CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA < 1:17061748/68‑1 CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA > 1:2394153/1‑68 CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA < 1:26589313/68‑1 CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA < 1:26244306/68‑1 CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA > 1:7696894/1‑68 CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA > 1:31367502/1‑68 TTAGTATCTAATCTGTTGTTCATGTGCCGGTTAGTTTTTCCGGCACATGAACAACAGATTAGATACTA > 1:11220891/1‑68 TAGTATCTAATCTGTTGTTCATGTGCCGGATAGTTTATCCGGCACTTGTACAACAGATTAGATACTAA > 1:23982495/1‑68 AGTATCTAATCTGTTGTTCATGTGCCGGATAGTTTATCCGGCACATGAACAACAGGTTAGGTACTTAA > 1:34428147/1‑68 TATCTAATCTGTTGTTCATGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGG > 1:30369869/1‑68 ATCTGTTGTTCATGTGCCGGATAGTTTATCCGGCACATGAGCAACAGATTAGATACTAAAGGAAGAA > 1:2026297/1‑67 CTGTTGTTCATGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACC > 1:5242457/1‑67 ATGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCATCCGCAG > 1:16558344/1‑68 ATGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAG > 1:8808334/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:31239749/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:307423/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:31374543/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:1327177/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:3192669/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:13937119/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:22062935/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:6041782/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:8517581/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:9551525/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:29782596/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:24492834/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:28359848/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:16291843/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:25293934/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:19328145/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG < 1:17708296/68‑1 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:25952614/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCA < 1:6303896/66‑1 GTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGT > 1:10602464/1‑68 TGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGT > 1:8382188/1‑67 TGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGT > 1:16172286/1‑67 GCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGC < 1:29188006/68‑1 GCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGT > 1:15510666/1‑66 GCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGT > 1:3821235/1‑66 CCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCT > 1:9495632/1‑68 CCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCT > 1:2080973/1‑68 CCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCT > 1:31995044/1‑68 CGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTT > 1:26610780/1‑68 CGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTT > 1:9107365/1‑68 CGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCT < 1:11486274/67‑1 CGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCT < 1:8496510/67‑1 CGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCT < 1:5180237/67‑1 ATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTC > 1:19763561/1‑68 ATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTC > 1:24249277/1‑68 ATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTC > 1:12134339/1‑68 ATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTC > 1:14487142/1‑68 ATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTT < 1:25236613/67‑1 ATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTT < 1:34192957/67‑1 AGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCACCCGCAGGTGCTTTTCGC > 1:22844923/1‑68 AGTTTATCCGGCACATGAACAACAGATTAGATAATAAAGGAAGAACCGCAACCGCAGGTGCTTTTCGC > 1:32063349/1‑68 GTGACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/173385‑173463‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgtgccggataGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTCGC < CP009273/173466‑173400 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |