| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 173463 | NA (NA) | 7 (0.020) | 7/88 | NT | NA | noncoding (8/19 nt) | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 173466 | NA (NA) | noncoding (11/19 nt) | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 498 total aligned reads displayed.
ACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGA > CP009273/173398‑173530 | aCGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATaa < 1:17087501/67‑1 (MQ=255)aCGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGCATCTAATCTGTTGTTCATGTGCCGGATaaa < 1:8783500/68‑1 (MQ=255) aGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtatccg < 1:11486274‑M2/67‑7 (MQ=255) aCCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtatccggc > 1:15510666‑M2/1‑58 (MQ=255) ccTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtatccggcaca > 1:25293934‑M2/1‑57 (MQ=255) ccTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtatccggcaca > 1:6041782‑M2/1‑57 (MQ=255) ccTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtatccggcaca > 1:307423‑M2/1‑57 (MQ=255) ccTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtatccggcaca > 1:31374543‑M2/1‑57 (MQ=255) tgcggttgcggtTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtatccggcaca < 1:6303896‑M2/66‑12 (MQ=255) gcggttgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACAtct < 1:371695/68‑1 (MQ=255) gcggttgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACAtct < 1:33094461/68‑1 (MQ=255) ggttgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACAtcttc < 1:11755787/68‑1 (MQ=255) ggttgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACAtcttc < 1:9672840/68‑1 (MQ=255) ggttgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACAtcttc < 1:23989270/68‑1 (MQ=255) tgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTtctct < 1:32034508/68‑1 (MQ=255) tgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTtctct < 1:23654560/68‑1 (MQ=255) tgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTtctct < 1:34222269/68‑1 (MQ=255) tgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTtctct < 1:8893738/68‑1 (MQ=255) cggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTctctct > 1:31553874/1‑68 (MQ=255) cggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTctctct > 1:24888128/1‑68 (MQ=255) ggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTctctct < 1:9204525/67‑1 (MQ=255) ttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACg < 1:1226014/68‑1 (MQ=255) ttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACg < 1:3348284/68‑1 (MQ=255) ttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACg < 1:21700711/68‑1 (MQ=255) ttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACg < 1:20740742/68‑1 (MQ=255) tcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGc < 1:10360/68‑1 (MQ=255) ccTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtatccggcacatgaacaacagattagata > 1:30369869‑M2/1‑39 (MQ=255) cTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGccc > 1:28448215/1‑68 (MQ=255) cTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGccc > 1:26550945/1‑68 (MQ=255) cTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGccc > 1:18701780/1‑68 (MQ=255) cTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGccc > 1:19576682/1‑68 (MQ=255) ttaAGTACCTAACCTGTTGTTCATGTGCCGGATAAACtatccggcacatgaacaacagattagatact > 1:34428147‑M2/1‑37 (MQ=255) ttAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAt > 1:29675366/1‑68 (MQ=255) tattATCTAATCTGTTGTTCATGTTCCGGATAAACTATCCGGCAAATCTTCTCTCTTCAACGCCCAtt < 1:706489/65‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:11413548/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:13777415/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:4601457/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:28313786/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:13342463/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:27125344/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:4285584/68‑1 (MQ=255) tAGTATCAAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAt > 1:16363083/1‑67 (MQ=255) aGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAt > 1:12543131/1‑66 (MQ=255) gTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATtc > 1:24262237/1‑67 (MQ=255) tATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATtctc > 1:5084155/1‑68 (MQ=255) aTCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCa > 1:34090314/1‑68 (MQ=255) aTCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCa < 1:10993390/68‑1 (MQ=255) aTCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATATTCTCTCTTCAAAGCCCATTCTCa > 1:1835296/1‑68 (MQ=255) cTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCAt > 1:13022000/1‑67 (MQ=255) cTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCAt > 1:27713102/1‑67 (MQ=255) cTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCAt > 1:2947661/1‑67 (MQ=255) aTCTGTTGTTCATGTGCCGGATAgtttatccggcacatgagcaacagattagatactaaaggaagaa > 1:2026297‑M1/1‑23 (MQ=255) aTCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCa > 1:18212593/1‑67 (MQ=255) aTCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCa > 1:2579311/1‑67 (MQ=255) aTCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCa > 1:17703439/1‑67 (MQ=255) aTCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCa > 1:18090850/1‑67 (MQ=255) aTCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCa > 1:22984838/1‑67 (MQ=255) aTCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCa > 1:19888498/1‑67 (MQ=255) tCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgc < 1:19066352/68‑1 (MQ=255) tCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgc > 1:33955019/1‑68 (MQ=255) tCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgc < 1:21219848/68‑1 (MQ=255) cTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgc > 1:7881035/1‑67 (MQ=255) cTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgc > 1:2471050/1‑67 (MQ=255) cTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgc > 1:23330318/1‑67 (MQ=255) gttgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCCGCGCa > 1:6578156/1‑68 (MQ=255) gttgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCa > 1:10049735/1‑68 (MQ=255) gttgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCa < 1:7597956/68‑1 (MQ=255) gttgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCa > 1:8601624/1‑68 (MQ=255) gttgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCa > 1:990208/1‑68 (MQ=255) gttgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCa > 1:10683233/1‑68 (MQ=255) gttgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCa > 1:14700496/1‑68 (MQ=255) gttgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCa > 1:21494694/1‑68 (MQ=255) ttgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCaa > 1:20849620/1‑68 (MQ=255) tgttCATGTGCCGGATAAACTATCCGGCCCATATTCTCTCTTCAAAGCCCAGTCTCATCAAGCCCaa > 1:14195888/1‑67 (MQ=255) tgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCaaa < 1:25646473/68‑1 (MQ=255) tgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCaaa < 1:400028/68‑1 (MQ=255) tgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCaa > 1:22563797/1‑67 (MQ=255) tCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACg > 1:12044740/1‑67 (MQ=255) aTGTGCCGGATAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcatccgcag > 1:16558344‑M1/1‑12 (MQ=255) aTGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAacgacg > 1:28736702/1‑68 (MQ=255) aTGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCg > 1:26032753/1‑68 (MQ=255) aTGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCg > 1:17410537/1‑68 (MQ=255) tgtgCCGGATAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcagg > 1:31239749‑M1/1‑11 (MQ=255) tgtgCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCgg < 1:15113999/68‑1 (MQ=255) tgtgCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCgg > 1:29943464/1‑68 (MQ=255) tgCCGGATAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcaggt > 1:16172286‑M1/1‑9 (MQ=255) tgCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTa > 1:8103142/1‑68 (MQ=255) gCCTGATAAACTATCCGGCACATCTTCTCTCTTCTACGCCCATTCTCTTGCAGCGCAAACGTCGGTa < 1:25195120/67‑1 (MQ=255) gCCGGATAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcaggtgc < 1:29188006‑M1/68‑61 (MQ=255) gCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTa > 1:5201372/1‑67 (MQ=255) gCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAg < 1:32784616/68‑1 (MQ=255) ccGGATAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcaggtgct > 1:9495632‑M1/1‑7 (MQ=255) cGGATAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcaggtgct < 1:8496510‑M1/67‑62 (MQ=255) cGGATAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcaggtgct < 1:24411621‑M1/67‑62 (MQ=255) cGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGc < 1:5601235/67‑1 (MQ=255) cGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGc < 1:31833109/67‑1 (MQ=255) cGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGc < 1:22410557/67‑1 (MQ=255) cGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGc < 1:32310037/67‑1 (MQ=255) aTAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcaggtgcttttc > 1:14487142‑M1/1‑3 (MQ=255) aaaCTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGa > 1:20670244/1‑68 (MQ=255) | ACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGA > CP009273/173398‑173530 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |