| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 699831 = | 333 (0.800) | 28 (0.080) | 6/96 | NT | 9.9% | coding (432/1947 nt) | nagE | fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB, and IIA components |
| ? | CP009273 | 699861 = | 222 (0.620) | coding (462/1947 nt) | nagE | fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB, and IIA components | |||||
Only 100 of 126 total aligned reads displayed.
AGAAACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/699903‑699831‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccgccGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTATC > CP009273/699861‑699927 AGAAACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATG < 1:18466781/67‑1 AACGCTCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:22060423/68‑1 AACGATCCCCTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:16660969/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGCCGTAACCAAAAATGGCC > 1:29402987/1‑67 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:1721640/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:4069452/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:21164313/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:4210970/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:22732163/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:19284155/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:5955418/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:18729507/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:6213617/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:651353/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:13713304/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:10655848/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:2907160/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:8333886/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:8941087/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:13248086/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:11489534/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCC > 1:21271133/1‑67 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGC < 1:7805792/66‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCGGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:11950004/68‑1 ACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGC < 1:3671015/68‑1 ACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG > 1:1801772/1‑67 ACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG > 1:33706579/1‑67 ACGATCCACTCGCCGCCTGCATAGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGC < 1:9785852/68‑1 ccATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCC < 1:30917836/66‑1 CGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCC < 1:29494426/68‑1 CGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCC < 1:26508858/68‑1 CGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCC < 1:2873371/68‑1 CGAGCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCC < 1:3364950/68‑1 GATCCCCTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCG < 1:14207335/68‑1 TCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGT < 1:11668036/68‑1 TCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGT < 1:33441950/68‑1 TCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGC < 1:34248817/68‑1 TCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGC < 1:23691223/68‑1 CGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCA < 1:4600667/68‑1 CGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCA < 1:14751264/68‑1 CGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCA < 1:33067262/68‑1 CGCCGCCTGCATGGATAGCGGGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCA < 1:20743719/68‑1 GCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCAC < 1:10412453/68‑1 GCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCAC < 1:20187832/68‑1 GCCGCCTGCATGCATCGCGGGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCAC < 1:34093378/68‑1 GCCTGCATGGAAAGCGTGCTGTACCGGCGGCCAGCCGTAACCAAAAATGGCCGCCGGTACAGCACGCT < 1:32962808/68‑1 ctcCATGGATAGCGTGCTGTACCGGCGGCCAGACTTAACCAAAAATGGCCGCCGGTACAGCACGCTAT < 1:8855781/65‑1 ctcCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCTAT < 1:10990127/65‑1 cgGCATGTATCGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGCCCGCCGGTACAGCACGCTAT < 1:27072647/66‑1 cgGCATGGACAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCTAT < 1:25872346/66‑1 CTGCTTGGATAGCGGGGTGTACCGGCGGCCAGACGAAACCAAAAATGGCCGCCGGTACAGCACGCTAT < 1:124496/68‑1 CTGCATGTCTAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCTA < 1:21600714/67‑1 CTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCTAT < 1:23290384/68‑1 CTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCTAT < 1:31285119/68‑1 CTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGATACAGCACGCTA < 1:24178656/67‑1 CTGCATGGATAGCGTGCGGAACCGGCGGCCAGACGTAACCAAAAATGCCCGCCGGTACAGCACGCTAT < 1:19767796/68‑1 CTGCATGGATAGCGGGCTGTACCGGCGGCCAGACGAAACCAAAAATGGCCGCCGGTACAGCACGCTA < 1:27547473/67‑1 CTGCATGGAAAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCTAT < 1:12166335/68‑1 CTGCAGGGATCGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCTAT < 1:276933/68‑1 tcGCGTGCTGTACCGGCGCCCAGACGAAACCAAAAATGCCCGCCGGTACAGCACGCTATCCATGCAGG < 1:4779569/66‑1 AATGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGT < 1:20526318/68‑1 TGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTC < 1:6608360/68‑1 GCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCag > 1:19114997/1‑66 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGCGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:6247874/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGGTGGGTTCCGG > 1:25246574/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:8029120/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:9805474/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:34313340/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:3624865/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:12404067/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:27563459/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:13351235/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:15188325/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:17292830/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:262890/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:22826249/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:22641207/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:21696659/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:19985835/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:20802339/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCG < 1:25549956/67‑1 CGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGT < 1:31783795/68‑1 CGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGT < 1:1959740/68‑1 CGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG < 1:18471331/67‑1 GCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTA > 1:6196274/1‑68 GCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTA < 1:15273633/68‑1 GCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTA < 1:26537377/68‑1 CGGTACAGCACGCTTTCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTATC < 1:26768382/68‑1 CGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTATC < 1:10647069/68‑1 CGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTATC < 1:417754/68‑1 CGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTATC < 1:32040358/68‑1 CGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTATC < 1:14507073/68‑1 CGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTAT < 1:17859103/67‑1 CGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTAT < 1:8355470/67‑1 CGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTAT < 1:12796670/67‑1 CGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTAT < 1:12516124/67‑1 CGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTAT < 1:9293524/67‑1 CGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTGTCTGCGGGAGCGCTGGGTTCCGGTATC < 1:26431575/68‑1 CGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTATCTGCGGGCGCGCTGGGTTCCGGTATC < 1:22931076/68‑1 CGGTACAGCACGCTATCCATGCAGGCGGCGAGGGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTAT < 1:19168737/67‑1 AGAAACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/699903‑699831‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccgccGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTATC > CP009273/699861‑699927 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |