| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 699831 = | 333 (0.800) | 28 (0.080) | 6/96 | NT | 9.9% | coding (432/1947 nt) | nagE | fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB, and IIA components |
| ? | CP009273 | 699861 = | 222 (0.620) | coding (462/1947 nt) | nagE | fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB, and IIA components | |||||
Only 100 of 446 total aligned reads displayed.
ACTTCCTGAGCTTCTTCGGCGGCAAACGCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCG > CP009273/699764‑699898 | gataccggaacccagcgctcccgcagacacgatccactcgccgcctgcatggatagcgtgctgtaccg < 1:26431575‑M1/1‑1 (MQ=255)gataccggaacccagcgcgcccgcagaaacgatccactcgccgcctgcatggatagcgtgctgtaccg < 1:14507073‑M1/1‑1 (MQ=255)gataccggaacccagcgcgcccgcagaaacgatccactcgccgcctgcatggatagcgtgctgtaccg < 1:417754‑M1/1‑1 (MQ=255) ataccggaacccagcgcgcccgcagaaacgatcccctcgccgcctgcatggatagcgtgctgtaccg < 1:19168737‑M1/1‑1 (MQ=255) ataccggaacccagcgcgcccgcagaaacgatccactcgccgcctgcatggatagcgtgctgtaccg < 1:17859103‑M1/1‑1 (MQ=255) ataccggaacccagcgcgcccgcagaaacgatccactcgccgcctgcatggatagcgtgctgtaccg < 1:9293524‑M1/1‑1 (MQ=255) ttCCTGAGCTTCTTCGGCGGCAAACGCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTggc > 1:23915549/1‑68 (MQ=255) ttCCTGAGCTTCTTCGGCGGCAAACGCTTTGTGCCGATTGCCACCGGAGTCTTCTGCCTGGTGCTggc > 1:30712890/1‑68 (MQ=255) ccggaacccagcgcgcccgcagaaacgatccactcgccgcctgcatggatagcgtgctgtaccggcgg > 1:21696659‑M1/64‑68 (MQ=255) ccggaacccagcgcgcccgcagaaacgatccactcgccgcctgcatggatagcgtgctgtaccggcgg > 1:262890‑M1/64‑68 (MQ=255) ccggaacccagcgcgcccgcagaaacgatccactcgccgcctgcatggatagcgtgctgtaccggcgg > 1:22826249‑M1/64‑68 (MQ=255) ccggaacccagcgcgcccgcagaaacgatccactcgccgcctgcatggatagcgtgctgtaccggcgg > 1:22641207‑M1/64‑68 (MQ=255) tGAGCTTCTTCGGCGGCAAACGCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGcc > 1:16908446/1‑68 (MQ=255) gaacccagcgcgcccgcagaaacgatccactcgccgcctgcatggatagcgtgctgtaccGGCGGCCa < 1:6608360‑M1/8‑1 (MQ=255) gctgctTCGGCGGCAAACGCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCAt < 1:26680878/67‑1 (MQ=255) cttcttCGGCGGCAAACGCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCAttt > 1:7780007/1‑68 (MQ=255) cttcttCGGCGGCAAACGCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCAttt > 1:22373702/1‑68 (MQ=255) cttcttCGGCGGCAAACGCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCAttt > 1:15923057/1‑68 (MQ=255) cttcttCGGCGGCAAACGCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCAttt > 1:32425220/1‑68 (MQ=255) cttcttCGGCGGCAAACGCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCAttt > 1:4914508/1‑68 (MQ=255) cttcttCGGCGGCAAACGCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCAttt > 1:9576620/1‑68 (MQ=255) cttcttCGGCGGCAAACGCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCAtgt > 1:27036666/1‑66 (MQ=255) ttcttcGGCGGCAAACGCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCAtt < 1:30190691/66‑1 (MQ=255) ttcGGCGGCAAACGCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTgg < 1:10650685/68‑1 (MQ=255) ttcGGCGGCAAACGCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTgg < 1:27982686/68‑1 (MQ=255) ggcAAACGCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACg < 1:14684666/67‑1 (MQ=255) ggcAAACGCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACg < 1:12775928/67‑1 (MQ=255) cTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGgccg < 1:11360535/67‑1 (MQ=255) tttGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGgccgcc < 1:31002820/68‑1 (MQ=255) tttGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGgccgcc < 1:1631037/68‑1 (MQ=255) tttGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGgccgcc < 1:28827635/68‑1 (MQ=255) ttGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGccgccg < 1:33879606/68‑1 (MQ=255) gtgCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGt < 1:24606942/68‑1 (MQ=255) gtgCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGt < 1:6116502/68‑1 (MQ=255) gtgCCGATTGCCACCGGATTCTTCTGCCTGGGGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGt < 1:34045007/68‑1 (MQ=255) tgCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGt > 1:28158721/1‑67 (MQ=255) tgCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGt > 1:14203494/1‑67 (MQ=255) tgCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGt > 1:32158365/1‑67 (MQ=255) ccGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACa > 1:19553594/1‑68 (MQ=255) cGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAg < 1:27170030/68‑1 (MQ=255) gATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGc < 1:5559242/68‑1 (MQ=255) ttGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCa < 1:31830351/67‑1 (MQ=255) ttGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCa < 1:4524607/67‑1 (MQ=255) ttGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCa < 1:1007004/67‑1 (MQ=255) ttGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCa < 1:24119569/67‑1 (MQ=255) ttGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCAc < 1:20943129/68‑1 (MQ=255) ttGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCAc < 1:23299623/68‑1 (MQ=255) ttGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCAc < 1:4802739/68‑1 (MQ=255) tGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCTGTACAGCACg < 1:20698549/68‑1 (MQ=255) tGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCAc > 1:29639145/1‑67 (MQ=255) tGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACg < 1:1474020/68‑1 (MQ=255) tGCCACCGGAATCTTCTCCCTGGAGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACg < 1:28630912/68‑1 (MQ=255) cACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCt < 1:31320978/67‑1 (MQ=255) cACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCt < 1:3570709/67‑1 (MQ=255) cACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCt < 1:15080755/67‑1 (MQ=255) cACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCt < 1:5944214/67‑1 (MQ=255) cACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCt < 1:8304841/67‑1 (MQ=255) cACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCt < 1:13794654/67‑1 (MQ=255) cACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCt < 1:21861242/67‑1 (MQ=255) cACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTa < 1:2561467/68‑1 (MQ=255) cACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTa < 1:5283094/68‑1 (MQ=255) cACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTa < 1:16745812/68‑1 (MQ=255) cACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGGCTGGCCGCCGGTACAGCACGCTa < 1:1359460/68‑1 (MQ=255) cACCGGATTCTTCTGCCAGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTa < 1:17433973/68‑1 (MQ=255) aCCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTa > 1:32569765/1‑67 (MQ=255) aCCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTAt < 1:6432109/68‑1 (MQ=255) aCCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTAt < 1:13175247/68‑1 (MQ=255) aCCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTAt < 1:15301616/68‑1 (MQ=255) aCCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTAt < 1:899085/68‑1 (MQ=255) aCCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTAt < 1:7312707/68‑1 (MQ=255) aCCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTAt < 1:26136954/68‑1 (MQ=255) ccGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTAt > 1:25784106/1‑67 (MQ=255) atagcgtgctgtaccGGCGGGCATTTTTGGTTACGTCTGGCCGCCGGTTCCGCACGCTATCCATGCAg < 1:19767796‑M1/53‑1 (MQ=255) atagcgtgctgtaccGGCGGCCATTTTTGGTTTCGTCTGGCCGCCGGTACACCCCGCTATCCAAGCAg < 1:124496‑M1/53‑1 (MQ=255) atagcgtgctgtaccGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTTTCCATGCAg < 1:12166335‑M1/53‑1 (MQ=255) atagcgtgctgtaccGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAg < 1:6260687‑M1/53‑1 (MQ=255) ttctGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAgg < 1:9349420/68‑1 (MQ=255) tagcgtgctgtaccGGCGGCCATTTTTGGTTTCGTCTGGCCGCCGGTACAGCCCGCTATCCATGCAg < 1:27547473‑M1/53‑1 (MQ=255) agcgtgctgtaccGGCGGCCATTTTTGGTTACGGCTGGCCGCCGGTACAGCACGCTTTCCATGCAggc < 1:32962808‑M1/55‑1 (MQ=255) tGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAggcgg < 1:21542876/68‑1 (MQ=255) gtgctgtaccGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAggcggc < 1:10412453‑M1/58‑1 (MQ=255) gtgctgtaccGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAggcggc < 1:20187832‑M1/58‑1 (MQ=255) gctgtaccGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGa < 1:23691223‑M1/60‑1 (MQ=255) cTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGa > 1:7012904/1‑68 (MQ=255) cTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGa > 1:972671/1‑68 (MQ=255) cTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGa > 1:18274778/1‑68 (MQ=255) cTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGa > 1:18489022/1‑68 (MQ=255) cTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGa > 1:2514325/1‑68 (MQ=255) cTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGa > 1:28379407/1‑68 (MQ=255) cTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGa > 1:30479030/1‑68 (MQ=255) cTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGa > 1:31637267/1‑68 (MQ=255) cTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGAAGGCGGCGa > 1:8566441/1‑68 (MQ=255) tGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAg < 1:18859991/68‑1 (MQ=255) gCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGa > 1:291031/1‑68 (MQ=255) gCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGa > 1:21300735/1‑68 (MQ=255) gCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGa < 1:33119482/68‑1 (MQ=255) gCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGa > 1:11000429/1‑68 (MQ=255) accGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGa < 1:34277106‑M1/65‑1 (MQ=255) accGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGa < 1:11668036‑M1/65‑1 (MQ=255) accGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGa < 1:33441950‑M1/65‑1 (MQ=255) | ACTTCCTGAGCTTCTTCGGCGGCAAACGCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCG > CP009273/699764‑699898 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |