New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1161584	203 (0.490)	11 (0.030)	7/108	NT	6.3%	coding (44/1305 nt)	ndh	respiratory NADH dehydrogenase 2/cupric reductase
	?	CP009273	1162080 =	132 (0.330)					coding (540/1305 nt)	ndh	respiratory NADH dehydrogenase 2/cupric reductase

TTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1161518‑1161584 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcGACGGGTGTAGAACTCTCCGCTGAATTG  >  CP009273/1162080‑1162107                                                                                                 TTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGC                              <  1:13339407/67‑1             AGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCGCCGGGGGTTGAA                 >  1:15102533/1‑68              GGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCGACGGGTGTAGAAa                >  1:18648483/1‑67               GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTAGGGGTGTTGAAC                >  1:15551187/1‑67               GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCGGGGGGTGTGGA                  >  1:26866827/1‑65               GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCGAGGGGTGTAGAAa                >  1:26803440/1‑66                      CGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCGACGGGGGTAGAACTCTCC           >  1:29091556/1‑65                        TTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCGACGGGTGTAGAAATCTCCGCTGA      >  1:18869914/1‑68                            CTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTCGGGGTGTTGAAATCTCCGCTCAATTG  >  1:18380391/1‑68                            CTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCGACGGGTGTAGAACTCTCCGCTGAATT   >  1:10579873/1‑67                            CTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCGACGGGTGTAGAACTCTCCGCTGAATT   >  1:7783985/1‑67                                 CCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCGACGGGTGTAGAACT               >  1:2623662/1‑50                                                                                                 TTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1161518‑1161584 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcGACGGGTGTAGAACTCTCCGCTGAATTG  >  CP009273/1162080‑1162107

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.