| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1161584 | 203 (0.490) | 11 (0.030) | 7/108 | NT | 6.3% | coding (44/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| ? | CP009273 | 1162080 = | 132 (0.330) | coding (540/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase | |||||
Only 100 of 230 total aligned reads displayed.
TCCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTACAAAG > CP009273/1162013‑1162147 | tCCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGcgcg > 1:21190086/1‑68 (MQ=255) ccTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGcgcg > 1:629267/1‑67 (MQ=255) aaaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACggg > 1:1611146/1‑68 (MQ=255) aaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACggg < 1:23174165/67‑1 (MQ=255) aaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgt > 1:24092921/1‑68 (MQ=255) aaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgt < 1:2664517/68‑1 (MQ=255) aaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgt < 1:30930612/68‑1 (MQ=255) aaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgt < 1:32644974/68‑1 (MQ=255) tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt > 1:19229309/1‑68 (MQ=255) tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt > 1:34168939/1‑68 (MQ=255) aCTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGCCGGGTGTa > 1:2114318/1‑68 (MQ=255) aCTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTa > 1:19667645/1‑68 (MQ=255) aCTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTa > 1:10044059/1‑68 (MQ=255) aCTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTa > 1:15443917/1‑68 (MQ=255) aCTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTa > 1:96709/1‑68 (MQ=255) tCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGa > 1:33721616/1‑68 (MQ=255) tCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGa > 1:8123809/1‑68 (MQ=255) tCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGa > 1:26575780/1‑68 (MQ=255) tCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGa > 1:5637154/1‑68 (MQ=255) agggggtcacgttgactacgccattgaaaaagattgtgattgtcggcggcggGGCGGGGGGTGTAGaa > 1:10683079‑M2/53‑68 (MQ=255) ggggtcacgttgactacgccattgaaaaagattgtgattgtcggcggcggCGCGACGGGTGTTGAAc > 1:20243601‑M2/51‑67 (MQ=255) gCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAAc > 1:5528305/1‑67 (MQ=255) gggtcacgttgactacgccattgaaaaagattgtgattgtcggcggcggaGCGGCGGGTGTGgaaa > 1:346373‑M2/51‑65 (MQ=255) cAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAActc > 1:18492991/1‑67 (MQ=255) tcacgttgactacgccattgaaaaagattgtgattgtcggcggcggGGCGGCTGGTGTTGAACtctc > 1:28875841‑M2/47‑67 (MQ=255) aCCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc < 1:1650906/68‑1 (MQ=255) ccTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc > 1:32126925/1‑67 (MQ=255) ccTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc > 1:11995120/1‑67 (MQ=255) ccTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc > 1:17445633/1‑67 (MQ=255) ccTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc > 1:5300280/1‑67 (MQ=255) ccTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc > 1:3578373/1‑67 (MQ=255) tGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc > 1:19836718/1‑65 (MQ=255) gttgactacgccattgaaaaagattgtgattgtcggcggcggaGCGACTGGTGTAGAACTCTCAGCt > 1:12774508‑M2/44‑67 (MQ=255) ttgactacgccatagaaaaagattgtgattgtcggcggcggCGCGGGGGGTGTTGAAATCTCCGCAGa > 1:31399931‑M2/42‑68 (MQ=255) gcgcGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGaa > 1:26189845/1‑68 (MQ=255) gcgcGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGa < 1:27064308/67‑1 (MQ=255) gcgcGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGa < 1:1241159/67‑1 (MQ=255) gcgcGAATGGCAAAGTGAACATTCCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCACCGCTGaa > 1:13371732/1‑68 (MQ=255) cgcgAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGCACTCTCCGCTGAAt > 1:31575536/1‑68 (MQ=255) cgcgAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAAt > 1:28363480/1‑68 (MQ=255) cgcgAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAAt > 1:23570170/1‑68 (MQ=255) gcgAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAAtt > 1:27523537/1‑68 (MQ=255) ctacgccattgaaaaagattgtgattgtcggcggcggtgcGACGGGTGTAGAACTCTCCGCTGAAtt > 1:10579873‑M2/41‑67 (MQ=255) ctacgccattgaaaaagattgtgattgtcggcggcggtgcGACGGGTGTAGAACTCTCCGCTGAAtt > 1:7783985‑M2/41‑67 (MQ=255) tacgccattgaaaaagattgtgattgtcggcggcggaGCTGCTGGTGTAGAAATCTCCGCAGAACTGc > 1:11225767‑M2/38‑68 (MQ=255) taagccattgaacaagattgtgattgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGc < 1:891167‑M2/32‑1 (MQ=255) aTGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGaa > 1:33153787/1‑50 (MQ=255) ccattgaaaaagattgtgattgtcggcggcggGGCGACGGGTGTAGAACTCTCCGCTGAAATgcacc > 1:4439015‑M2/33‑66 (MQ=255) gCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAAc > 1:15708969/1‑68 (MQ=255) cAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAAc < 1:1710971/67‑1 (MQ=255) cAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAAc < 1:30036172/67‑1 (MQ=255) aaGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAAcgcg < 1:21878539/68‑1 (MQ=255) aGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCgg > 1:8453612/1‑68 (MQ=255) gTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCgg > 1:258484/1‑67 (MQ=255) gTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCgg > 1:24007385/1‑67 (MQ=255) gTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCgg > 1:26898462/1‑67 (MQ=255) gTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCgg > 1:18515962/1‑67 (MQ=255) gAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTc < 1:10804735/67‑1 (MQ=255) gAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTc < 1:15155831/67‑1 (MQ=255) aagattgtgattgtcggcggcggGGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCaa > 1:7440796‑M2/24‑68 (MQ=255) aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCaa > 1:18932598/1‑67 (MQ=255) aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCaa > 1:33979955/1‑67 (MQ=255) aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCaa > 1:19239354/1‑67 (MQ=255) aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAg < 1:8346664/68‑1 (MQ=255) aTTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCCAGCa > 1:14964045/1‑68 (MQ=255) aTTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGc > 1:30474769/1‑67 (MQ=255) aTTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:14607826/1‑68 (MQ=255) aTTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa < 1:4881923/68‑1 (MQ=255) ttGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:27673936/1‑67 (MQ=255) gCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACt < 1:2897942/68‑1 (MQ=255) gCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACt < 1:227840/68‑1 (MQ=255) gCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACt < 1:2502344/68‑1 (MQ=255) gCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACt < 1:13162445/68‑1 (MQ=255) gattgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGc > 1:6893545‑M2/16‑68 (MQ=255) gattgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGc > 1:24689975‑M2/16‑68 (MQ=255) attgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGc > 1:6787837‑M2/15‑67 (MQ=255) attgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGc > 1:3943934‑M2/15‑67 (MQ=255) tgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGcaca > 1:20909536‑M2/13‑68 (MQ=255) tgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGcaca < 1:26262995‑M2/56‑1 (MQ=255) gtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAg < 1:34382960‑M2/57‑1 (MQ=255) tcggcggcggGGCGACGGGGGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGcaca > 1:17983635‑M2/11‑66 (MQ=255) cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc < 1:13111412‑M2/58‑1 (MQ=255) cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc < 1:12478185‑M2/58‑1 (MQ=255) cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc < 1:16636194‑M2/58‑1 (MQ=255) cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc < 1:11826388‑M2/58‑1 (MQ=255) gcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTAc > 1:23728975‑M2/8‑68 (MQ=255) ggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACg < 1:18661334‑M2/62‑1 (MQ=255) ggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACg < 1:6693676‑M2/62‑1 (MQ=255) ggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACg < 1:14003866‑M2/62‑1 (MQ=255) gcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGt > 1:29532734‑M2/5‑68 (MQ=255) gcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGt > 1:2786210‑M2/5‑68 (MQ=255) gcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGt > 1:33427563‑M2/5‑68 (MQ=255) cggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGt < 1:6660174‑M2/64‑1 (MQ=255) cggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGt < 1:18873654‑M2/64‑1 (MQ=255) ggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGtt < 1:32954615‑M2/65‑1 (MQ=255) ggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGtt < 1:28476144‑M2/65‑1 (MQ=255) ggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTa < 1:9217597‑M2/66‑1 (MQ=255) cgcgACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTAc < 1:14430960/67‑1 (MQ=255) cgcgACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTAc < 1:14306993/67‑1 (MQ=255) cgcgACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTAc < 1:26876610/67‑1 (MQ=255) | TCCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTACAAAG > CP009273/1162013‑1162147 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |