| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2845465 = | 321 (0.770) | 26 (0.070) | 12/96 | NT | 7.6% | coding (243/273 nt) | hypC | hydrogenase maturation protein |
| ? | CP009273 | 2845525 = | 353 (0.990) | coding (31/1122 nt) | hypD | hydrogenase maturation protein | |||||
GCATCACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2845537‑2845465‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgccgGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGA > CP009273/2845525‑2845589 GCATCACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCG < 1:27527537/68‑1GCATCACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGC > 1:8105247/1‑67GCATCACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGC > 1:24939721/1‑67GCATCACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGC > 1:7673631/1‑67GCATCACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGC > 1:27560706/1‑67GCATCACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGC > 1:30620677/1‑67GCATCACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGC > 1:18378586/1‑67GCATCACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGC > 1:4200868/1‑67 ATCACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCG < 1:24509206/68‑1 ATCACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCG < 1:23232820/68‑1 ATCACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCG < 1:30057450/68‑1 ATCACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCG < 1:4850256/68‑1 ATCACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCG < 1:15810876/68‑1 ATCACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCG < 1:7925580/68‑1 ATCACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGC < 1:862185/67‑1 ATCACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGC > 1:8080338/1‑67 TCACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGC < 1:6068093/68‑1 CACCTGTTCCGGCGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCG < 1:29119027/68‑1 CACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCC < 1:5984774/68‑1 CACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCC < 1:22805931/68‑1 CACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCC < 1:20836935/68‑1 CACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCC < 1:702274/68‑1 CACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCC < 1:30040535/68‑1 CACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCC < 1:6747125/68‑1 CACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCC < 1:30079414/68‑1 CACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCC < 1:30711302/68‑1 CACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCC < 1:34185986/68‑1 CACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCC < 1:4091079/68‑1 ACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCG > 1:31798274/1‑68 ACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCG > 1:2670779/1‑68 ACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCG > 1:25599158/1‑68 ACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCG > 1:33404017/1‑68 ACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCG > 1:10930310/1‑68 ACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCG > 1:19241731/1‑68 ACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCG > 1:14529338/1‑68 ACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCC > 1:27933228/1‑67 ACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCC > 1:28206281/1‑67 ACCTGATCCG‑‑GCGCGCGATATACATCAACAAAGCGCATTATTTTTCCTCGCCATACAACAGCGCGCC > 1:828579/1‑67 CCTGTTCCG‑‑GCGCGCGATATTCATCAACAAACCGCATTATTTTTCCTCGCCATACAACAGCGCGCCGG < 1:25385884/68‑1 CCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTGCTCGCCATACAACAGCGCGCCGG < 1:7661095/68‑1 CCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGG < 1:25848793/68‑1 CCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGG < 1:17136523/68‑1 CCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCG > 1:14609371/1‑67 TCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGAACAG < 1:28424187/68‑1 TCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGAACAG < 1:206433/68‑1 TCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGAACA < 1:20055410/67‑1 TCCG‑‑GCGCGCGAGATTCATCAACAAAACGCATTATTTTTCCTCGCCATACACCAGCGCGCCGGAACAG < 1:30882072/68‑1 TCCG‑‑GCGCGCGAAATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGAACAG < 1:29531863/68‑1 CG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGAACAGGT < 1:2107296/68‑1 G‑‑GCGCGCGATATTCATAAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGAACAGGTG > 1:5021597/1‑68 CGCGCGATATTCATCAACAAAACCCATTATTTTTCCTCCCCAAACAACAGCGCGCCGGAACAGGTGA < 1:21933711/67‑1 cCGCTATATTCATCAACAAAACGCATTATTATACCTCGCCATACAACAGCGCGCCGGAACAGGTGAT < 1:3823066/66‑1 GCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGAACAGGTGATGC < 1:14089863/67‑1 GATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGAACAGGTGATGCAG < 1:20099844/67‑1 GATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGAACAGGTGATGCAG < 1:24560833/67‑1 GATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGAACAGGTGATGCAG < 1:10370710/67‑1 GATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGAACAGGTGACGCAG < 1:19936909/67‑1 GATATTCATCAACAAAACGCATTATTTTTCCTCCCCATACAACCGCGCGCCGGAACAGGTGATGCAG < 1:28429532/67‑1 GATAATCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGAACAGGTGATGCAG < 1:27468828/67‑1 TATTCATCAACAAACCGCATTATTTTTCCTCGCCAAACAACAGCGCGCCGGAACAGGTGATGCAGTTA < 1:20012264/68‑1 TATTCATCAACAAAACGCATTATTTTTCCTCGCCATACCACAGCGCGCCGGAACAGGTGATGCAGTTA < 1:20445755/68‑1 TATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGAACAGGTGATGCAGTTA < 1:23842911/68‑1 TATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGAACAGGTGATGCAGTT < 1:11810132/67‑1 TATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGAACAGGTGATGCAGTT < 1:31064705/67‑1 TATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGAACAGGTGATGCAGTT < 1:30846737/67‑1 ATTCATCAACAAACCGCATTATTTTTCCTCGCCAAACAACCGCGCGCCGGAACAGGTGATGCAGTTAA < 1:30828639/68‑1 tccTCAACAAAACGCATTATTTAACCTCCCCAAACAACAGCGCGCCGGAACAGGTGATGCAGTTAATT < 1:23900858/65‑1 TCATCAACAACACGCATTATTTTTCCACGCCATACAACCGCGCGCCGGAACAGGTGATGCAGTTAATT < 1:32962316/68‑1 aaCAACAAAACGCATTATTTTTCCTCGCCATACAACACCGCGCCGGAACAGGTGATGCAGTTAATTGA < 1:14520186/66‑1 CAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGGAACAGGTGATGCAGTTAATTGAGC < 1:344320/68‑1 GCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACC < 1:355455/68‑1 GCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACC < 1:18018874/68‑1 GCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACC < 1:24660776/68‑1 GCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACC < 1:8494763/68‑1 GCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACA > 1:21681422/1‑66 CGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACC > 1:26777585/1‑67 CGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACC > 1:4980478/1‑67 GCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGC < 1:8673440/68‑1 GCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGC < 1:14106142/68‑1 GCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGC < 1:16415409/68‑1 GCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGC < 1:1787979/68‑1 GCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCG > 1:20061692/1‑67 GCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCG > 1:2018784/1‑67 GCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCG > 1:31190538/1‑67 GCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCG > 1:2729332/1‑67 GCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCG > 1:468624/1‑67 GCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCG > 1:17901277/1‑67 GCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCG > 1:134339/1‑68 GCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCG < 1:26550222/68‑1 GCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCG < 1:4576888/68‑1 GCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCG > 1:172444/1‑68 CGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGA > 1:33245512/1‑67 GCATCACCTGTTCCG‑‑GCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2845537‑2845465‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgccgGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGA > CP009273/2845525‑2845589 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |