| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2974100 | NA (NA) | 8 (0.020) | 6/90 | NT | NA | noncoding (9/23 nt) | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2974105 | NA (NA) | noncoding (14/23 nt) | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 201 total aligned reads displayed.
CAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2974023‑2974100‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccggatgtGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTCGT < CP009273/2974105‑2974039 AAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGG > 1:20420212/1‑68 AAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGG > 1:21072561/1‑68 AAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGG > 1:29831737/1‑68 AAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGG > 1:27643924/1‑68 AGGCTGATTAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGG < 1:29662387/68‑1 AGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGG < 1:16953152/68‑1 AGGCTGAATAAGGAACGAGACAAACGACTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGG < 1:23628524/68‑1 GGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGG > 1:30286332/1‑67 GGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGG > 1:23131455/1‑67 gcgGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:13715340/4‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGGCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:13853659/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:18951570/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:31405916/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:21717280/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:1652571/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:23264714/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:28241067/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:12461355/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:1017590/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:24941793/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:27138954/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:26436226/1‑68 GCTGAAAAAGGAACGAGACAAACGCCTCAACGGCCAAGTGACCAATCTCTATTAACGAAAAAAGGcc > 1:24841705/1‑65 TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG < 1:7769716/67‑1 TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG < 1:29068136/67‑1 TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG < 1:31798431/67‑1 TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG < 1:33509371/67‑1 TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG < 1:11168369/67‑1 TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG < 1:5459610/67‑1 TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG < 1:4458926/67‑1 TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG < 1:363940/67‑1 TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG < 1:15980793/67‑1 TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG < 1:17998179/67‑1 gtATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:27927601/66‑1 GAATAAGTAACGAGAAAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:332941/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:6748625/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:17342610/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:9499013/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:16776045/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:11412259/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:20690639/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:19619408/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:13472295/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:438903/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGAGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:4127358/68‑1 ATAAGGAACGAGTCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT < 1:32911234/67‑1 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATG > 1:18160312/1‑68 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATG > 1:15881280/1‑68 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATG > 1:18865646/1‑68 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT < 1:2415996/67‑1 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT < 1:13032808/67‑1 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT < 1:16458586/67‑1 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT < 1:17263897/67‑1 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT < 1:1843822/67‑1 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT < 1:20987896/67‑1 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT < 1:24036645/67‑1 ATAAGGAAC‑‑GACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:27868627/67‑1 TAAGGAACGAGACAAACGCCTCAACGTCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:24577062/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCTAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT > 1:6112512/1‑68 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:5977911/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:7724894/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:3914258/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:6423691/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT > 1:9053128/1‑68 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:23053919/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:26234409/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:26774540/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:7357608/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT > 1:25211907/1‑68 AAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT > 1:28812712/1‑67 AAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT > 1:30078782/1‑67 AAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT > 1:2081193/1‑67 AAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT > 1:2010666/1‑67 ATCTCTATTAACGAAAAAAGGGCCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTTATAGAGATTGG > 1:34057848/1‑68 ATCTCTATTAACGAAAAAAGGGCCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGG > 1:1786847/1‑68 CGAAAAAAGGGCCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCG > 1:22649568/1‑68 AGGGCCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGC > 1:1163103/1‑68 GGGCCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCG < 1:12722907/68‑1 GGGCCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCG < 1:25979887/68‑1 GCCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGT < 1:32677977/67‑1 GCCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGAT < 1:27822772/44‑1 CCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTT > 1:2563843/1‑68 GGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGT < 1:14819445/68‑1 GGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGT < 1:14132894/68‑1 GGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGT < 1:7409179/68‑1 GGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGT < 1:4666751/68‑1 GGATGTGCTGTACATCCGGCCCTTTTTTCGATAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGT < 1:28554778/68‑1 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:9635361/1‑68 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:31936360/1‑68 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:30872481/1‑68 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:27584925/1‑68 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:26146880/1‑68 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:22012667/1‑68 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:17186619/1‑68 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGC > 1:22784984/1‑43 TGTGCTGTACATCCGGCCCTTTTTGCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:12142658/1‑68 GTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTCG < 1:25949824/68‑1 GTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTCG < 1:8493127/68‑1 TGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTCGT > 1:3097456/1‑68 TGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTCGT > 1:7919805/1‑68 CAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2974023‑2974100‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccggatgtGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTCGT < CP009273/2974105‑2974039 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |