| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2974100 | NA (NA) | 8 (0.020) | 6/90 | NT | NA | noncoding (9/23 nt) | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2974105 | NA (NA) | noncoding (14/23 nt) | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 344 total aligned reads displayed.
AACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCG > CP009273/2974038‑2974171 | cGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCac < 1:12073491‑M2/68‑3 (MQ=255) gagaCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCaca > 1:9635361‑M2/1‑65 (MQ=255) gagaCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCaca > 1:29781820‑M2/1‑65 (MQ=255) gagaCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCaca > 1:27584925‑M2/1‑65 (MQ=255) gagaCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCaca > 1:26146880‑M2/1‑65 (MQ=255) gagaCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCaca > 1:31936360‑M2/1‑65 (MQ=255) gagaCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCaca > 1:17186619‑M2/1‑65 (MQ=255) aaaCGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAACGGGCCGGATGTACAGCacatccgg > 1:33406672‑M2/1‑60 (MQ=255) aaaCGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatccgg > 1:2563843‑M2/1‑60 (MQ=255) aaCGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatccgg < 1:31071303‑M2/67‑9 (MQ=255) aaCGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatccgg < 1:22945818‑M2/67‑9 (MQ=255) cGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatccggccc < 1:12722907‑M2/68‑12 (MQ=255) gCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCg > 1:17568241/1‑68 (MQ=255) ccTCAACGGCCAAGTGCCCAATCTCTATTAACTAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGt > 1:17799561/1‑68 (MQ=255) ccTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGt > 1:34022190/1‑68 (MQ=255) cTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGt < 1:12932358/67‑1 (MQ=255) aaCGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGaaa > 1:33621971/1‑68 (MQ=255) aCGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGaaa > 1:309514/1‑67 (MQ=255) aCGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGaaa > 1:1345230/1‑67 (MQ=255) aCGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGaaa > 1:28257186/1‑67 (MQ=255) aCGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGaaa > 1:12477805/1‑67 (MQ=255) cGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatccggcccttttttcg > 1:22649568‑M2/1‑49 (MQ=255) ggCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCa > 1:18676167/1‑68 (MQ=255) ggCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCa > 1:19414304/1‑68 (MQ=255) ggCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCa > 1:8627203/1‑68 (MQ=255) ggCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCa > 1:15733845/1‑68 (MQ=255) cAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAgcc > 1:7229996/1‑66 (MQ=255) aaGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACg < 1:30160403/68‑1 (MQ=255) aaGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACg < 1:24375772/68‑1 (MQ=255) aaGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACg < 1:822217/68‑1 (MQ=255) aGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACg > 1:60951/1‑67 (MQ=255) aGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACg > 1:10765768/1‑67 (MQ=255) tGCCCAATCTCGATTAACGAAAAAAGGGCCGGATGTCCAGCACATCCGGCCCGTGAAATCTGccgccg > 1:22002995/1‑68 (MQ=255) gCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatccggcccttttttcgttaataga > 1:28665425‑M2/1‑40 (MQ=255) gCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGa > 1:28860790/1‑68 (MQ=255) ccAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatccggcccttttttcgttaatagagat > 1:1786847‑M2/1‑38 (MQ=255) aaTCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATAtt < 1:32481252/68‑1 (MQ=255) aaTCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATAtt < 1:30485157/68‑1 (MQ=255) aaTCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATAtt < 1:11321573/68‑1 (MQ=255) aaTCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATAtt < 1:23500217/68‑1 (MQ=255) aaTCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTAAAATCAGACGCCGATAtt < 1:25955512/68‑1 (MQ=255) aTCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatccggc < 1:27822772‑M2/44‑10 (MQ=255) aTCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATAtt > 1:33227426/1‑67 (MQ=255) aTCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATAtt > 1:24180401/1‑67 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtct > 1:27063664/1‑68 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtct < 1:20123814/68‑1 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtc > 1:28456723/1‑67 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtc > 1:29460363/1‑67 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtc > 1:9291018/1‑67 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtc > 1:21042797/1‑67 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtc > 1:35192/1‑67 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtc > 1:4878725/1‑67 (MQ=255) tctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtctc > 1:24854396/1‑68 (MQ=255) tctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtctc > 1:2215257/1‑68 (MQ=255) tATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCa > 1:21218440/1‑67 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACt > 1:10026124/1‑68 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACt > 1:30756235/1‑68 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACt > 1:17957456/1‑68 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACt > 1:16694285/1‑68 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACt > 1:15697916/1‑68 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACt < 1:30050128/68‑1 (MQ=255) cGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCACCTtctc > 1:34070959/1‑68 (MQ=255) cGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTtctc > 1:561227/1‑68 (MQ=255) cGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTtctc > 1:7506612/1‑68 (MQ=255) cGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTtctc > 1:25925428/1‑68 (MQ=255) cGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTtctc > 1:29136209/1‑68 (MQ=255) cGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTtctc > 1:11608304/1‑68 (MQ=255) cGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTtctc > 1:14183501/1‑68 (MQ=255) gAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCg < 1:21736073/68‑1 (MQ=255) caaaaaacGGCCGGATGTACAGCacacccggcccttttttctttaatagagattgggcacttggccgt > 1:16525227‑M2/2‑23 (MQ=255) aaaGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTg < 1:12830541/68‑1 (MQ=255) aaaGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTg < 1:13847269/68‑1 (MQ=255) aaaGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTg < 1:7772776/68‑1 (MQ=255) aaaGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTg < 1:18789368/68‑1 (MQ=255) aGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGcc > 1:16121292/1‑68 (MQ=255) aGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGcc < 1:665284/68‑1 (MQ=255) gCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCAt < 1:20319153/67‑1 (MQ=255) cGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCa < 1:18267212/67‑1 (MQ=255) ggATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGt < 1:6401536/68‑1 (MQ=255) ggATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGt < 1:14684498/68‑1 (MQ=255) tGTACAGCACATCCGGCCCGTGAAATCAGCCGCCGATATTTCTCAACTTCTCGCCTGCCATCAGttt > 1:20735896/1‑67 (MQ=255) tGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTg > 1:2738712/1‑68 (MQ=255) gTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGc < 1:3829242/68‑1 (MQ=255) gTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGc < 1:16934770/68‑1 (MQ=255) aCAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGt > 1:19787606/1‑68 (MQ=255) aCAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGt > 1:33046228/1‑68 (MQ=255) aGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTc > 1:804061/1‑68 (MQ=255) aGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTc > 1:4140869/1‑68 (MQ=255) aGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTc > 1:15161470/1‑68 (MQ=255) aGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTc > 1:5399630/1‑68 (MQ=255) aGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTc > 1:16214570/1‑68 (MQ=255) aGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTc > 1:21107250/1‑68 (MQ=255) aGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTc > 1:3165684/1‑68 (MQ=255) aGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTc > 1:24004973/1‑68 (MQ=255) aGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCGGCCATCAGTTTGCGTTc > 1:7064396/1‑68 (MQ=255) gCACATCCGGCCCGTGCAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCAATCAGTTTGGGTTCg > 1:4662592/1‑68 (MQ=255) gCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCg > 1:23133617/1‑68 (MQ=255) gCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCg > 1:9056504/1‑68 (MQ=255) gCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCg > 1:26589669/1‑68 (MQ=255) gCACATCCGGCCCGTGAAATCAGACACCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCg > 1:10669477/1‑68 (MQ=255) | AACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCG > CP009273/2974038‑2974171 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |