| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3729681 | NA (NA) | 8 (0.030) | 7/84 | NT | NA | noncoding (168/171 nt) | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | CP009273 | = 3729685 | NA (NA) | intergenic (+168/+28) | xylR/bax | xylose divergent operon transcriptional activator/putative glucosaminidase | |||||
Only 100 of 294 total aligned reads displayed.
CCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3729601‑3729681‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccttatccgactTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGT < CP009273/3729685‑3729619 CCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAA > 1:19377742/1‑68 CAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAG < 1:22757267/68‑1 AGGCATGGTAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAGAAAG > 1:16365606/1‑67 AGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAG > 1:18799800/1‑67 GGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAG > 1:4087378/1‑66 CATGATAAAACGCACCACCAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTT > 1:5832923/1‑68 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTT > 1:15271086/1‑68 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTT > 1:13728995/1‑68 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTT > 1:1756187/1‑68 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCC < 1:27449864/66‑1 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGC < 1:24226766/65‑1 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAACCCTT > 1:1617531/1‑68 ATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTA > 1:31312420/1‑68 ATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTT < 1:2717934/67‑1 ATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTT < 1:14115011/67‑1 ATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTT < 1:10092933/67‑1 ATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCC > 1:7877440/1‑68 TAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCG > 1:5314513/1‑68 TAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCG > 1:6233393/1‑68 TAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCG < 1:9542469/68‑1 AAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCG > 1:1503367/1‑67 AAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCG > 1:14485900/1‑67 AAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCG > 1:14316053/1‑67 AAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCG > 1:10879824/1‑67 AAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCG > 1:32533436/1‑67 AAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCG > 1:13097116/1‑67 AAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGAAAAAGTAAAAAGCCTTATCCG > 1:8188995/1‑67 AAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAATCCTTATCCGAC < 1:26414097/68‑1 AAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGAC < 1:23438817/68‑1 AACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACT < 1:31418336/68‑1 CTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGCCTTGGCAGGCGGATAAGGCTTTTT > 1:19134436/1‑68 AGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTT > 1:33885797/1‑68 AGTAAAAAGCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTAC > 1:10202734/1‑68 GCCTTATGCGACTTGTCAGTCGGATATGGCTTTTTACTTTGTCTCATGCAGTTGAGCTACGAGCCTGA < 1:12137561/68‑1 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:24595089/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:15693368/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:300431/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:28849401/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:28334036/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:11015897/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:17312652/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:32912725/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:25133203/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:7426754/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:6954903/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:23064109/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:3886027/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:12511243/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:4776283/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:19943325/1‑68 CCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:8518173/1‑68 CCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:29464366/1‑68 CCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:9032645/1‑68 CTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCTGTTGAGCTACGAGCCTGA < 1:32250620/66‑1 CTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTGGTCTCAGGCAGTTGAGCTACGAGCCTGA < 1:32009703/66‑1 TTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGC < 1:18237246/68‑1 TTATCCGACTTGTCAGGCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGC < 1:27988348/68‑1 TATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCG < 1:16683593/68‑1 TATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCG < 1:7519138/68‑1 TATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCG < 1:11898268/68‑1 TATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCG < 1:13325325/68‑1 TATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCG < 1:4728687/68‑1 TATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCG < 1:25992843/68‑1 TATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCG < 1:4220616/68‑1 TATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCG < 1:12955804/68‑1 ATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGT > 1:23643644/1‑68 TCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTT < 1:33084868/68‑1 TCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTT < 1:6308205/68‑1 TCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTT < 1:9849599/68‑1 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGCGCTACGAGCCTGAAGCGTTG > 1:14919061/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:18983217/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:11507493/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:18087859/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:8625162/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:2467063/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:34302093/1‑68 CGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGT < 1:4446757/68‑1 CGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCGCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGT < 1:11762319/68‑1 ACTTGTCAGTCGGATAAGGCTTTTTTCTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:30618703/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGCGCCTGAAGCGTTGTTG > 1:14835625/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:16045041/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:8797175/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:11345458/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:18578984/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:1071138/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:19261564/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:20282030/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:21018402/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:21276179/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:21640899/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:3989531/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:24365324/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:26727348/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:29300245/1‑68 CTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGCGCCTGAAGCGTTGTTGG > 1:19643070/1‑68 CTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGG < 1:17762101/68‑1 CTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGG > 1:2818605/1‑68 CTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGG > 1:31121022/1‑68 TTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGT > 1:26262018/1‑68 TTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGATACGAGCCTGAAGCGTTGTTGGT < 1:22294811/68‑1 CCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3729601‑3729681‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccttatccgactTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGT < CP009273/3729685‑3729619 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |