| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3729681 | NA (NA) | 8 (0.030) | 7/84 | NT | NA | noncoding (168/171 nt) | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | CP009273 | = 3729685 | NA (NA) | intergenic (+168/+28) | xylR/bax | xylose divergent operon transcriptional activator/putative glucosaminidase | |||||
Only 100 of 918 total aligned reads displayed.
ACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATCCTGGTAC > CP009273/3729619‑3729752 | ccAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAag > 1:31121022‑M2/1‑66 (MQ=255) ccAACAACGCTTCAGGCGCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAag > 1:19643070‑M2/1‑66 (MQ=255) caacaaCGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagt > 1:24365324‑M2/1‑65 (MQ=255) caacGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcgg > 1:11101005‑M2/1‑62 (MQ=255) caacGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcgg > 1:8625162‑M2/1‑62 (MQ=255) caacGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcgg > 1:14065878‑M2/1‑62 (MQ=255) aacGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcgga > 1:2824498‑M2/1‑61 (MQ=255) aacGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcgga < 1:6308205‑M2/68‑8 (MQ=255) aacGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcgga < 1:4283406‑M2/68‑8 (MQ=255) aacGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcgga < 1:32873933‑M2/68‑8 (MQ=255) acGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggat > 1:23643644‑M2/1‑60 (MQ=255) cGCTTCAGGCTCGTAGCTCAACTGCCTTAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggata < 1:24628207‑M2/68‑10 (MQ=255) cGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggata < 1:13325325‑M2/68‑10 (MQ=255) cGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggata < 1:25992843‑M2/68‑10 (MQ=255) cGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggata < 1:15504917‑M2/68‑10 (MQ=255) gCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataa < 1:18237246‑M2/68‑11 (MQ=255) cTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataag < 1:14981231‑M2/68‑12 (MQ=255) tCAGGCTCGTAGCTCAACTGCCTGAGAGAAAGTAAAAAGCCTTATCCGACTGACAagtcggataaggc > 1:12086038‑M2/1‑55 (MQ=255) tCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTTACAagtcggataaggc > 1:22994523‑M2/1‑55 (MQ=255) tCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataaggc > 1:22733799‑M2/1‑55 (MQ=255) tCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataaggc > 1:26974016‑M2/1‑55 (MQ=255) tCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataaggc > 1:5998733‑M2/1‑55 (MQ=255) tCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataaggc > 1:16883780‑M2/1‑55 (MQ=255) aGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAg < 1:9444389/63‑1 (MQ=255) aGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAAt < 1:21670943/68‑1 (MQ=255) tCAACTGCCTGAGACAGAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGc < 1:16204815/67‑1 (MQ=255) tCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATg < 1:30346991/66‑1 (MQ=255) tCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGc < 1:26646402/67‑1 (MQ=255) tCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGc < 1:22211438/67‑1 (MQ=255) tCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGc < 1:3350858/67‑1 (MQ=255) tCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCa < 1:6794054/68‑1 (MQ=255) tCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCa < 1:460132/68‑1 (MQ=255) tCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCa < 1:14332590/68‑1 (MQ=255) tCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCa < 1:20510350/68‑1 (MQ=255) tCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCa > 1:25360721/1‑68 (MQ=255) tCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCa < 1:34071306/68‑1 (MQ=255) cAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCaa < 1:21880165/68‑1 (MQ=255) aCTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAAtt > 1:31945800/1‑68 (MQ=255) aCTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAAtt > 1:13796121/1‑68 (MQ=255) aCTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAAtt > 1:2973302/1‑68 (MQ=255) aCTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAAtt > 1:32493776/1‑68 (MQ=255) aCTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAAtt > 1:1039156/1‑68 (MQ=255) cTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTa < 1:2778426/68‑1 (MQ=255) tGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTAc > 1:734908/1‑68 (MQ=255) tGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTAc < 1:18982058/68‑1 (MQ=255) tGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTAc > 1:15287907/1‑68 (MQ=255) gCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACa < 1:3976355/68‑1 (MQ=255) gCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACa < 1:14746618/68‑1 (MQ=255) aCAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATgcg > 1:4950386/1‑67 (MQ=255) aCAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATgcg > 1:18647009/1‑67 (MQ=255) aaGTAAAAAGCCTTATCCGACTTACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGcgccgc < 1:31487463/68‑1 (MQ=255) aGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATAAGCGCcgcg < 1:27370745/68‑1 (MQ=255) gTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGa > 1:30779603/1‑68 (MQ=255) tAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGAt > 1:27941958/1‑68 (MQ=255) aaaaaGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGa < 1:26326389/66‑1 (MQ=255) aaGCCTTATCCGACTGGCAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAAc < 1:17379702/68‑1 (MQ=255) aaGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAAc < 1:29916498/68‑1 (MQ=255) aGCCTTTTCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAAcc < 1:12530334/68‑1 (MQ=255) aGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAAcc < 1:33134778/68‑1 (MQ=255) aGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAAcc < 1:23319595/68‑1 (MQ=255) aGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAAcc < 1:25038787/68‑1 (MQ=255) gCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATGTGCGCCGCGATTAACCg > 1:16720996/1‑68 (MQ=255) gCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATg > 1:9101772/1‑53 (MQ=255) gCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCg > 1:2575046/1‑68 (MQ=255) gCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCg > 1:3770250/1‑68 (MQ=255) gCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCg > 1:7574234/1‑68 (MQ=255) gCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCg > 1:8898792/1‑68 (MQ=255) gCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCg > 1:11539042/1‑68 (MQ=255) cTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGtt < 1:10041845/68‑1 (MQ=255) ttATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAAGCGTTg < 1:11776438/68‑1 (MQ=255) ttATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTg < 1:32244425/68‑1 (MQ=255) tATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTgg < 1:7992757/68‑1 (MQ=255) tATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTgg < 1:21067942/68‑1 (MQ=255) tATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTgg < 1:5189678/68‑1 (MQ=255) ccGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTa > 1:12794942/1‑68 (MQ=255) ccGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTa > 1:19336768/1‑68 (MQ=255) ccGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTa > 1:20779693/1‑68 (MQ=255) ccGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTa > 1:17877694/1‑68 (MQ=255) ccGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTa > 1:28965109/1‑68 (MQ=255) gACTGACAAGTCGGATAAGGCTCTAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:2856848/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACTTATGCGCCGCGATTAACCGTTGGTTATc < 1:20109495/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:13020417/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:15808517/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:12230623/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:8350210/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:4749899/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:10718024/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:955095/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:16423902/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:30029312/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:19125194/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:34480437/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:34261864/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:33798994/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:21354720/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:23938987/68‑1 (MQ=255) gACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATCCTgg < 1:29263384/68‑1 (MQ=255) cAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATCCTGGt < 1:17633755/67‑1 (MQ=255) cAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATCCTGGt > 1:5487382/1‑67 (MQ=255) aagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcgttgttggtgcgt > 1:7159127‑M2/1‑1 (MQ=255) | ACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATCCTGGTAC > CP009273/3729619‑3729752 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |