New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 4512275 =358 (0.860)24 (0.070) 11/92 NT 7.0% coding (1637/1968 nt) yjhG putative dehydratase
?CP009273 4512318 = 340 (1.000)coding (1594/1968 nt) yjhG putative dehydratase

Only 100 of 574 total aligned reads displayed.

TTCAATTAAATCCCCGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTA  >  CP009273/4512208‑4512342
                                                                   |                                                                   
ttCAATTAAATCCCCGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGc                                                                     <  1:11976711/68‑1 (MQ=255)
ttCAATTAAATCCCCGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGc                                                                     <  1:14861665/68‑1 (MQ=255)
ttCAATTAAATCCCCGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGc                                                                     <  1:26258242/68‑1 (MQ=255)
ttCAATAAAATCCCCGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGc                                                                     <  1:1929178/68‑1 (MQ=255)
 aagaaacctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaattacc                                                                    <  1:1123347‑M1/2‑1 (MQ=255)
 aagaaacctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcacc                                                                    <  1:1559689‑M1/2‑1 (MQ=255)
  agaaacctaccaggttaccagtgccctggagcatctgtcatacggtaagcatgtttcgttaatcacc                                                                    >  1:31928018‑M1/66‑67 (MQ=255)
   gaaacctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcaCCGa                                                                  <  1:21509775‑M1/4‑1 (MQ=255)
    aTTAAATCCCCGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGAt                                                                 <  1:30048450/68‑1 (MQ=255)
    aTTAAATCCCCGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGAt                                                                 <  1:26020245/68‑1 (MQ=255)
     aacctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcaCCGAt                                                                 >  1:336343‑M1/63‑67 (MQ=255)
      tAAATCCCCGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGc                                                               <  1:24875905/68‑1 (MQ=255)
      acctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcaCCGATGc                                                               <  1:7434736‑M1/7‑1 (MQ=255)
       cctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcaCCGATGc                                                               <  1:278103‑M1/7‑1 (MQ=255)
       cctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcaCCGATGc                                                               <  1:28053395‑M1/7‑1 (MQ=255)
       cctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcaCCGATGc                                                               <  1:7282476‑M1/7‑1 (MQ=255)
       cctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcaCCGATGCa                                                              >  1:2825231‑M1/61‑68 (MQ=255)
       cctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcaCCGATGCa                                                              >  1:29565173‑M1/61‑68 (MQ=255)
         aTCCCCGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGGGCTTCTGGCCCCACATGGCCGATGCAc                                                             >  1:13600268/1‑67 (MQ=255)
         aTCCCCGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCAc                                                             >  1:9682717/1‑67 (MQ=255)
           ccccGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGTCCCCACATGGCCGATTCAcgcg                                                          <  1:26968757/68‑1 (MQ=255)
           ccccGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCAcgcg                                                          <  1:27212264/68‑1 (MQ=255)
           ccccGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCAcgcg                                                          <  1:26811351/68‑1 (MQ=255)
           ccccGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCAcgcg                                                          <  1:3996353/68‑1 (MQ=255)
           ccccGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCAcgc                                                           >  1:23735855/1‑67 (MQ=255)
           ccccGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCAcgc                                                           >  1:34121475/1‑67 (MQ=255)
           ccccGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCAcgc                                                           >  1:5860671/1‑67 (MQ=255)
             ccGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGcc                                                        <  1:27412673/68‑1 (MQ=255)
             ccGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGcc                                                        <  1:13021205/68‑1 (MQ=255)
               ggTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAg                                                      <  1:8731235/68‑1 (MQ=255)
                 tGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTa                                                    >  1:25763519/1‑68 (MQ=255)
                    gTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGaa                                                 >  1:25340036/1‑68 (MQ=255)
                       ttttACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCCCGCGCCAGTAGAAAc                                               >  1:17988175/2‑67 (MQ=255)
                       aTTTACCGATGGGGCCTCCGGCCCGCGATTCTGGCCCCACATGGCCGCTGCACGCGCCAGTAGCAAc                                               >  1:8294459/1‑67 (MQ=255)
                       aTTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAAc                                               >  1:25475269/1‑67 (MQ=255)
                       aTTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAAc                                               >  1:1080978/1‑67 (MQ=255)
                       aTTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAAc                                               >  1:18456557/1‑67 (MQ=255)
                       aTTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAAc                                               >  1:29107931/1‑67 (MQ=255)
                       aTTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAAc                                               >  1:32774814/1‑67 (MQ=255)
                       aTTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACg                                              <  1:16378380/68‑1 (MQ=255)
                       aTTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGAACGCGCCAGTAGAAAc                                               >  1:23903096/1‑67 (MQ=255)
                         ttACGGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGcc                                            <  1:12136585/68‑1 (MQ=255)
                         ttACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGcc                                            <  1:32591806/68‑1 (MQ=255)
                         ttACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGcc                                            <  1:32134202/68‑1 (MQ=255)
                         ttACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGcc                                            <  1:11661116/68‑1 (MQ=255)
                         ttACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGcc                                            <  1:19609846/68‑1 (MQ=255)
                         ttACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGcc                                            <  1:9179994/68‑1 (MQ=255)
                         ttACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGc                                             >  1:28495935/1‑67 (MQ=255)
                            ccGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCGGTAGAAACGCCCga                                         >  1:17494308/1‑68 (MQ=255)
                            ccGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCga                                         >  1:16168671/1‑68 (MQ=255)
                              gATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCgaga                                       >  1:18943421/1‑68 (MQ=255)
                              gATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCgaga                                       >  1:13131309/1‑68 (MQ=255)
                              gATGGGGCCTCCGGCCAGCGCTTCTGG‑CCCACATGGCCGATGCACGCGCCAGTAGAAAAGCCCGAGaa                                      >  1:7940387/1‑68 (MQ=255)
                               agcatctgtcatacggtaagcatgtttcgttaatcaCCGATGCCCGCGCCAGTAGAAACGCCCGAGaa                                      <  1:22468948‑M1/32‑1 (MQ=255)
                                tGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGaaa                                     <  1:21000631/68‑1 (MQ=255)
                                   ggCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGt                                  >  1:16758159/1‑68 (MQ=255)
                                   ggCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGt                                  >  1:14639545/1‑68 (MQ=255)
                                    gCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGt                                  <  1:16904328/67‑1 (MQ=255)
                                     ccTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGc                                >  1:11447988/1‑68 (MQ=255)
                                      gtcatacggtaagcatgtttcgttaatcaCCGATGCACGCGCCAGTAGAAACGCCCGGGCAACGTGCa                               <  1:3157940‑M1/39‑1 (MQ=255)
                                          ggCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCgg                           >  1:5109384/1‑68 (MQ=255)
                                            ccAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGt                          <  1:21903004/67‑1 (MQ=255)
                                             ggtaagcatgtttcgttaatcaCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGa                        <  1:13413940‑M1/46‑1 (MQ=255)
                                             ggtaagcatgtttcgttaataaCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGa                        <  1:28778899‑M1/46‑1 (MQ=255)
                                             cAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGa                        <  1:632515/68‑1 (MQ=255)
                                             cAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGa                        <  1:30437751/68‑1 (MQ=255)
                                                 gcTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTa                     >  1:34357460/1‑67 (MQ=255)
                                                 gcTTCTGGCCCCACATGGCCGAAGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGaaga                     >  1:20390668/1‑64 (MQ=255)
                                                   ttCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACg                  <  1:8898273/68‑1 (MQ=255)
                                                    tCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGa                 <  1:4348841/68‑1 (MQ=255)
                                                    atgtttcgttaatcaCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGa                 <  1:23398098‑M1/53‑1 (MQ=255)
                                                      tGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGac                >  1:26467715/1‑66 (MQ=255)
                                                      tGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGaa                >  1:17240992/1‑67 (MQ=255)
                                                         ccccACATGGCCGATGCTCGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACa             <  1:32443311/67‑1 (MQ=255)
                                                         ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACa             <  1:6011849/67‑1 (MQ=255)
                                                         ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACa             <  1:24174440/67‑1 (MQ=255)
                                                         ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACa             <  1:33169898/67‑1 (MQ=255)
                                                         ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACa             <  1:26626744/67‑1 (MQ=255)
                                                         ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt            >  1:12858218/1‑68 (MQ=255)
                                                         ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt            >  1:15202228/1‑68 (MQ=255)
                                                         ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt            >  1:20637718/1‑68 (MQ=255)
                                                          cccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt            <  1:7019828/67‑1 (MQ=255)
                                                          cccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATg           <  1:4652150/68‑1 (MQ=255)
                                                          cccACATGGCCGATGAACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATg           <  1:31071368/68‑1 (MQ=255)
                                                           ccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt            >  1:22771470/1‑66 (MQ=255)
                                                           ccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt            >  1:14141659/1‑66 (MQ=255)
                                                              caTGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGCTTAACGAAACATGCtt        >  1:33427218/1‑67 (MQ=255)
                                                              caTGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCtt        >  1:33859577/1‑67 (MQ=255)
                                                              caTGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCtt        >  1:23044364/1‑67 (MQ=255)
                                                               aTGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTa       >  1:18714455/1‑67 (MQ=255)
                                                               aTGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTa       >  1:12525041/1‑67 (MQ=255)
                                                                  gCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGt   >  1:27635274/1‑68 (MQ=255)
                                                                  gCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGt   >  1:15892565/1‑68 (MQ=255)
                                                                  aCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGt   <  1:17731581‑M1/67‑1 (MQ=255)
                                                                   CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGt   >  1:6703782‑M1/1‑67 (MQ=255)
                                                                   CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGt   >  1:20070357‑M1/1‑67 (MQ=255)
                                                                   CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGt   >  1:3780523‑M1/1‑67 (MQ=255)
                                                                   CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGt   >  1:30836866‑M1/1‑67 (MQ=255)
                                                                   CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTa  <  1:31700995‑M1/68‑1 (MQ=255)
                                                                   CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTa  <  1:10094072‑M1/68‑1 (MQ=255)
                                                                   |                                                                   
TTCAATTAAATCCCCGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTA  >  CP009273/4512208‑4512342

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.