| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 253 | 342 (0.820) | 22 (0.060) | 12/92 | NT | 6.0% | coding (64/66 nt) | thrL | thr operon leader peptide |
| ? | CP009273 | = 278 | 411 (1.210) | intergenic (+23/‑59) | thrL/thrA | thr operon leader peptide/Bifunctional aspartokinase/homoserine dehydrogenase 1 | |||||
Only 100 of 846 total aligned reads displayed.
TCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGG > CP009273/187‑320 | tCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTg > 1:5763261/1‑68 (MQ=255) cATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTgcc > 1:5198323/1‑66 (MQ=255) aTGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGAcg < 1:23875262/68‑1 (MQ=255) aTGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGAcg < 1:19285419/68‑1 (MQ=255) aTGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGAcg < 1:17107661/68‑1 (MQ=255) gAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGAcgcg < 1:29147037/68‑1 (MQ=255) gAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGAcgcg < 1:32245329/68‑1 (MQ=255) aaCGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGt > 1:26681408/1‑67 (MQ=255) aaCGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGt < 1:16822566/67‑1 (MQ=255) gCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAg < 1:26327327/68‑1 (MQ=255) aTTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGa < 1:10004039/68‑1 (MQ=255) aGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGCCGCGTACAGCAAac > 1:2253307/1‑68 (MQ=255) aGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAac > 1:4950254/1‑68 (MQ=255) aGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAac < 1:22039311/68‑1 (MQ=255) caccacCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAacac > 1:18107570/1‑68 (MQ=255) accaccATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGGTtttttctgtgtttgctgt > 1:24985474‑M1/1‑49 (MQ=255) accaccATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAAcaca > 1:9785629/1‑68 (MQ=255) accaccATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAAcaca > 1:31097545/1‑68 (MQ=255) ccaccaTTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAg < 1:25904601/68‑1 (MQ=255) accaTTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGaa < 1:27959210/68‑1 (MQ=255) accaTTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGaa < 1:10779260/68‑1 (MQ=255) caTTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGaaaa > 1:18570351/1‑68 (MQ=255) tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAag > 1:12064885‑M2/1‑66 (MQ=255) accaccaccATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAag < 1:27106283‑M2/67‑3 (MQ=255) accaccaccATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAag < 1:28184316‑M2/67‑3 (MQ=255) ccaccaccaTCACCATTACCACAGGTAACGGTGCGGGGTtttttctgtgtttcctgtacgcgtcggc > 1:20259381‑M1/1‑39 (MQ=255) ccaccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagc < 1:27410643‑M2/67‑4 (MQ=255) ccaccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagc < 1:30905314‑M2/67‑4 (MQ=255) caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc < 1:15410216‑M2/68‑6 (MQ=255) caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc < 1:21771545‑M2/68‑6 (MQ=255) caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc < 1:24300636‑M2/68‑6 (MQ=255) caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc < 1:24632742‑M2/68‑6 (MQ=255) caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc < 1:5477099‑M2/68‑6 (MQ=255) accaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc < 1:9078023‑M2/67‑6 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:34259088‑M2/1‑61 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc < 1:31612956‑M2/68‑8 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:22776038‑M2/1‑61 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:30127816‑M2/1‑61 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:25317017‑M2/1‑61 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACACGAAACACAGAAAAAagcccgc > 1:15122661‑M2/1‑61 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCGGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:3980225‑M2/1‑61 (MQ=255) caccatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgca > 1:22994730‑M2/1‑60 (MQ=255) caccatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc < 1:27516904‑M2/67‑8 (MQ=255) accatcaccatTACCACAGGTAACGGTGCGGGCTtttttctgtgtttcctgtacgcgtcagcccgca > 1:9588067‑M1/1‑34 (MQ=255) accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcac > 1:15939814‑M2/1‑59 (MQ=255) accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgca < 1:10388816‑M2/67‑9 (MQ=255) accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgca < 1:34465645‑M2/67‑9 (MQ=255) catcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCt < 1:26916192/68‑1 (MQ=255) caccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGAc > 1:23592770/1‑68 (MQ=255) catTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCTCCTGACAgg > 1:17525879/1‑67 (MQ=255) catTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGCCAGt > 1:20956662/1‑68 (MQ=255) catTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGt < 1:8441737/68‑1 (MQ=255) catTACCACAGGTAACGGAGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcaccgttacct > 1:6414314‑M2/1‑51 (MQ=255) atTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGt > 1:3543215/1‑67 (MQ=255) ttACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGc > 1:19740416/1‑68 (MQ=255) ttACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGc > 1:30417468/1‑68 (MQ=255) aCCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:33771509/1‑68 (MQ=255) cacaGGTAACGGTGCGGGCTtttttctgtgtttcctgtacgcgtcagcccgctccgttacctgtggta > 1:1636801‑M1/1‑20 (MQ=255) cacaGGTAACGGTGCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggta > 1:7706024‑M1/1‑20 (MQ=255) cacaGGTAACGGTGCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggta > 1:28756144‑M1/1‑20 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:18354383/1‑66 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:6658761/1‑66 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:29681944/1‑66 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGc < 1:33570702/68‑1 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAAAACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:14201632/1‑66 (MQ=255) acaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCt > 1:13585482/1‑68 (MQ=255) aGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttt > 1:32695541/1‑68 (MQ=255) gTAACGGTGCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggt > 1:12879008‑M1/1‑15 (MQ=255) gTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttttt > 1:11234162/1‑68 (MQ=255) gTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttttt > 1:14876875/1‑68 (MQ=255) aaCGGTGCGGGCTGACGCGTACAGGACACACAGAAAAAcgcccgcaccgttacctgtggtaatggtg > 1:7976336‑M2/1‑38 (MQ=255) aCGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttttttt > 1:1654634/1‑67 (MQ=255) ggTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttttttttt > 1:23311840/1‑67 (MQ=255) gTGCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggt > 1:13980363‑M1/1‑9 (MQ=255) gTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCg > 1:10241411/1‑68 (MQ=255) gTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCg > 1:8847263/1‑68 (MQ=255) tGCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggt < 1:13459939‑M1/67‑60 (MQ=255) tGCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatg < 1:24077368‑M1/65‑58 (MQ=255) tGCGGGCTtttttctgtgtttcctgtacgcggcagcccgcaccgttacctgtggtaatggtgatggt < 1:20022787‑M1/67‑60 (MQ=255) ggcGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatg < 1:33106404‑M1/64‑58 (MQ=255) ggcGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatg < 1:20543900‑M1/64‑58 (MQ=255) gCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtgg > 1:30845316‑M1/1‑7 (MQ=255) gCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtgg > 1:1238946‑M1/1‑7 (MQ=255) gCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtgg > 1:6911889‑M1/1‑7 (MQ=255) cGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGAc < 1:21388374/67‑1 (MQ=255) gggCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtg < 1:118441‑M1/68‑64 (MQ=255) gggCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtg < 1:14393794‑M1/68‑64 (MQ=255) gggCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtg < 1:17809552‑M1/68‑64 (MQ=255) gggCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtg < 1:28448768‑M1/68‑64 (MQ=255) gggCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtg < 1:7286250‑M1/68‑64 (MQ=255) gggCTGACGCGTACAGGAAACACAGAAAAAagcccgcaccgttacctgtggtaatggtgatggtggtg > 1:34112043‑M2/1‑30 (MQ=255) gCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtgg < 1:22193628‑M1/67‑65 (MQ=255) gCTtttttctgtgtttcctgtacgcggcagcccgcaccgttacctgtggtaatggtgatggtggtgg < 1:29433314‑M1/67‑65 (MQ=255) cTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtggta > 1:27734953‑M1/1‑2 (MQ=255) cTGACGCGTACAGGAAACACAGAAAAACGCCCCCACCTGACAGTGCGGGCTTTTTTTTTCGACCaaa < 1:3793677/67‑1 (MQ=255) cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAg > 1:8714598/1‑68 (MQ=255) cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAg > 1:12557020/1‑68 (MQ=255) ttttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtggta < 1:17358320‑M1/67‑67 (MQ=255) ttttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtggta < 1:11445981‑M1/67‑67 (MQ=255) tGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAg < 1:6140380/67‑1 (MQ=255) | TCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGG > CP009273/187‑320 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |