New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 253342 (0.820)22 (0.060) 12/92 NT 6.0% coding (64/66 nt) thrL thr operon leader peptide
?CP009273 = 278 411 (1.210)intergenic (+23/‑59) thrL/thrA thr operon leader peptide/Bifunctional aspartokinase/homoserine dehydrogenase 1

Only 100 of 670 total aligned reads displayed.

TACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAGTGT  >  CP009273/213‑346
                                                                 |                                                                    
tACCACCAGCATTACCATTACCACAGGTAACGTTGCGGGCTGACGCGTACAGGAAACACAGAAAAAag                                                                    >  1:16120763‑M2/1‑66 (MQ=255)
tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAag                                                                    >  1:16937468‑M2/1‑66 (MQ=255)
tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAag                                                                    >  1:14096110‑M2/1‑66 (MQ=255)
 accaccaccATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAag                                                                    <  1:27106283‑M2/67‑3 (MQ=255)
  ccaccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGCCGCGTACAGGAAACACAGAAAAAagc                                                                   <  1:29433314‑M2/67‑4 (MQ=255)
  ccaccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagc                                                                   <  1:3090362‑M2/67‑4 (MQ=255)
  ccaccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagc                                                                   <  1:15244900‑M2/67‑4 (MQ=255)
  ccaccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagc                                                                   <  1:34207599‑M2/67‑4 (MQ=255)
   caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc                                                                 <  1:118441‑M2/68‑6 (MQ=255)
   caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc                                                                 <  1:15644347‑M2/68‑6 (MQ=255)
   caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc                                                                 <  1:12500396‑M2/68‑6 (MQ=255)
   caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc                                                                 <  1:5477099‑M2/68‑6 (MQ=255)
   caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc                                                                 <  1:5231971‑M2/68‑6 (MQ=255)
    accaccaTCACCATTACCACAGGTAACGGTGCGGGCTGCCGCGTACAGGAAACACAGAAAAAagccc                                                                 <  1:3808908‑M2/67‑6 (MQ=255)
    accaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc                                                                 <  1:9713394‑M2/67‑6 (MQ=255)
     ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc                                                               >  1:6407652‑M2/1‑61 (MQ=255)
     ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc                                                               >  1:12177059‑M2/1‑61 (MQ=255)
     ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc                                                               >  1:23549763‑M2/1‑61 (MQ=255)
     ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc                                                               >  1:22776038‑M2/1‑61 (MQ=255)
      caccatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgca                                                              >  1:18128029‑M2/1‑60 (MQ=255)
       accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcac                                                             >  1:6026020‑M2/1‑59 (MQ=255)
       accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcac                                                             >  1:10010145‑M2/1‑59 (MQ=255)
       accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgca                                                              <  1:10388816‑M2/67‑9 (MQ=255)
         catcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcc                                                              <  1:20543900‑M2/65‑9 (MQ=255)
         catcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCt                                                           <  1:26916192/68‑1 (MQ=255)
          atcacaatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcaccgt                                                          >  1:27430075‑M2/1‑56 (MQ=255)
            caccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAGCACAGAAAAAAGCCCGCACCTGAc                                                        >  1:17396048/1‑68 (MQ=255)
            caccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGAc                                                        >  1:30081658/1‑68 (MQ=255)
            caccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGAc                                                        >  1:13311776/1‑68 (MQ=255)
             accatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACa                                                       >  1:17558038/1‑68 (MQ=255)
              ccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAg                                                      >  1:28447188/1‑68 (MQ=255)
              ccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAg                                                      >  1:22163643/1‑68 (MQ=255)
               catTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcaccgttacct                                                     >  1:24935596‑M2/1‑51 (MQ=255)
               catTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGCCAGt                                                     >  1:20956662/1‑68 (MQ=255)
               catTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGt                                                     <  1:19552194/68‑1 (MQ=255)
                atTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTg                                                    <  1:26646530/68‑1 (MQ=255)
                  tACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcaccgttacctgtg                                                  >  1:7556286‑M2/1‑48 (MQ=255)
                    ccACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcaccgttacctgtggt                                                >  1:21996136‑M2/1‑46 (MQ=255)
                     cacaGGTAACGGTGCGGGCTGACGCGTACCGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg                                                 >  1:22413791/1‑66 (MQ=255)
                     cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg                                                 >  1:20012728/1‑66 (MQ=255)
                     cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg                                                 >  1:18354383/1‑66 (MQ=255)
                     cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg                                                 >  1:8801412/1‑66 (MQ=255)
                     cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg                                                 >  1:11185310/1‑66 (MQ=255)
                     cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGc                                               <  1:16665124/68‑1 (MQ=255)
                     cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGc                                               <  1:33570702/68‑1 (MQ=255)
                     cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGACCGCACCTGACAGTGCgg                                                 >  1:25685388/1‑66 (MQ=255)
                      acaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCt                                              >  1:25386716/1‑68 (MQ=255)
                        aGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttt                                            >  1:8341449/1‑68 (MQ=255)
                        aGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttt                                            >  1:2628846/1‑68 (MQ=255)
                        aGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttt                                            >  1:32695541/1‑68 (MQ=255)
                          gTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttttt                                          >  1:32896311/1‑68 (MQ=255)
                           tAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCtttttt                                         >  1:24138389/1‑68 (MQ=255)
                           tAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCtttttt                                         >  1:8916610/1‑68 (MQ=255)
                             aCGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCtttttttt                                       >  1:19299630/1‑68 (MQ=255)
                             aCGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttttttt                                        >  1:12713720/1‑67 (MQ=255)
                              cGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCtttttttt                                       >  1:2427730/1‑67 (MQ=255)
                               ggTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTc                                     >  1:31425656/1‑68 (MQ=255)
                                gTGCGGGCTGACGCGTACAGGAACCACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCg                                    >  1:8108543/1‑68 (MQ=255)
                                gTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCg                                    >  1:10241411/1‑68 (MQ=255)
                                gTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCg                                    >  1:13546471/1‑68 (MQ=255)
                                gTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCg                                    >  1:28164743/1‑68 (MQ=255)
                                gTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCg                                    >  1:21355330/1‑68 (MQ=255)
                                gTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCg                                    >  1:23337656/1‑68 (MQ=255)
                                 tGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCtttttttttag                                    >  1:11421080/1‑65 (MQ=255)
                                  gCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGa                                   >  1:3609851/1‑67 (MQ=255)
                                  gCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGAc                                  <  1:31096307/68‑1 (MQ=255)
                                  gCGGGCTGACGCGTACAGGAAACACACAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGa                                   <  1:34531407/67‑1 (MQ=255)
                                  gCGGGCTGACGAGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGa                                   >  1:30210978/1‑67 (MQ=255)
                                    gggCTGACGCGTACAGGAAACACAGAAAAAagcccgcaccgttacctgtggtaatggtgatggtggtg                                >  1:14311889‑M2/1‑30 (MQ=255)
                                     ggCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCaa                               >  1:18642872/1‑68 (MQ=255)
                                     ggCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCaa                               >  1:14625110/1‑68 (MQ=255)
                                      gCCGACGCGTACAGGAAACACAGAAAAAaccccgcaccgttacctgtggtaatggtgatggtggtgg                               >  1:20259381‑M2/1‑28 (MQ=255)
                                       cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCAGCTGACAGTGCGGGCTTTTTTTTTCGACCAAAg                             >  1:17904127/1‑68 (MQ=255)
                                       cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGCCCAAAg                             >  1:27666374/1‑68 (MQ=255)
                                       cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAg                             >  1:23802863/1‑68 (MQ=255)
                                       cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAg                             >  1:24489667/1‑68 (MQ=255)
                                       cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAg                             >  1:13667047/1‑68 (MQ=255)
                                       cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAg                             >  1:28931532/1‑68 (MQ=255)
                                       cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAg                             >  1:17192416/1‑68 (MQ=255)
                                         gACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGt                           <  1:30614812/68‑1 (MQ=255)
                                                aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAgg                    <  1:33933776/68‑1 (MQ=255)
                                                aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAgg                    <  1:15025398/68‑1 (MQ=255)
                                                aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAgg                    <  1:10865914/68‑1 (MQ=255)
                                                aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAgg                    <  1:6855498/68‑1 (MQ=255)
                                                aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAgg                    <  1:6591733/68‑1 (MQ=255)
                                                     aaaCACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTaaca               >  1:4965009/1‑68 (MQ=255)
                                                      aaCACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTaaca               <  1:34319600/67‑1 (MQ=255)
                                                      aaCACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAAGTAACGAGGTaacaa              <  1:23086536/68‑1 (MQ=255)
                                                       acacAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTaacaac             <  1:28594365/68‑1 (MQ=255)
                                                       acacAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTaacaac             <  1:7140379/68‑1 (MQ=255)
                                                       acacAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTaacaa              >  1:4066666/1‑67 (MQ=255)
                                                        cacaGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTAACAAcc            <  1:5826318/68‑1 (MQ=255)
                                                        cacaGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTAACAAcc            >  1:8579000/1‑68 (MQ=255)
                                                        cacaGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTAACAAcc            >  1:16445204/1‑68 (MQ=255)
                                                          caGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGCCCAAAGGGAACGAGGTAACAACCAt          >  1:27827777/1‑68 (MQ=255)
                                                               aaaaGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAg     <  1:29755627/68‑1 (MQ=255)
                                                                aaaGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAgt    <  1:32194081/68‑1 (MQ=255)
                                                                aaaGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAgt    <  1:9346599/68‑1 (MQ=255)
                                                                 aaGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAgtg   >  1:31985376/1‑68 (MQ=255)
                                                                 aaGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAgtgt  <  1:21720146/68‑1 (MQ=255)
                                                                 |                                                                    
TACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAGTGT  >  CP009273/213‑346

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.