| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 66560 = | 290 (0.700) | 464 (1.840) +CGTTTTTTTGGATGGAGGAATT |
44/68 | NT | 65.8% | intergenic (‑28/‑314) | araD/araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| ? | CP009273 | = 3509273 | 504 (1.220) | intergenic (‑1/+106) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring | |||||
Only 100 of 1164 total aligned reads displayed.
TGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATAAA > CP009273/66493‑66627 | gtgtTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAgg < 1:5546787/68‑1 (MQ=255) acttgccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacggg > 1:5992283‑M1/67‑68 (MQ=255) cttgccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGt < 1:9269670‑M1/3‑1 (MQ=255) cttgccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGt < 1:15591994‑M1/3‑1 (MQ=255) cttgccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGt < 1:30359914‑M1/3‑1 (MQ=255) ttttGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTAt > 1:2265847/1‑68 (MQ=255) gccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATg > 1:16900685‑M1/63‑68 (MQ=255) gccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATg > 1:1157254‑M1/63‑68 (MQ=255) gccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATg > 1:8725488‑M1/63‑68 (MQ=255) ttGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATg < 1:3010195/67‑1 (MQ=255) tGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGga < 1:8022202/68‑1 (MQ=255) cccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaccgGGTATGga < 1:12298176‑M1/8‑1 (MQ=255) cccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGga < 1:13003626‑M1/8‑1 (MQ=255) cccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGga < 1:24901486‑M1/8‑1 (MQ=255) cccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGga < 1:14047457‑M1/8‑1 (MQ=255) cccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGga < 1:28534012‑M1/8‑1 (MQ=255) cccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGga < 1:4409982‑M1/8‑1 (MQ=255) cccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGga > 1:17580888‑M1/61‑68 (MQ=255) cccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGga < 1:26275938‑M1/8‑1 (MQ=255) ggCAGCGCCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGgag > 1:31087924/1‑68 (MQ=255) ggCAGCGCCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGgag > 1:33762015/1‑68 (MQ=255) ggCAGCGCCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGgag > 1:25717936/1‑68 (MQ=255) ccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGgag < 1:33183734‑M1/9‑1 (MQ=255) ccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGgag < 1:20158605‑M1/9‑1 (MQ=255) ccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatacaaaaaaacgGGTATGgag < 1:29395874‑M1/9‑1 (MQ=255) ctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGaa > 1:14949089‑M1/58‑68 (MQ=255) ctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGaa > 1:1337800‑M1/58‑68 (MQ=255) cAGCGCCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGaa > 1:25496469/1‑68 (MQ=255) aGCGCCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGaa < 1:17073331/67‑1 (MQ=255) aGCGCCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGaa < 1:1185903/67‑1 (MQ=255) gcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAAc > 1:28817101‑M1/56‑68 (MQ=255) gcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAAc > 1:20675267‑M1/56‑68 (MQ=255) cccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACa < 1:26568470‑M1/14‑1 (MQ=255) gcCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAAc < 1:11184981/66‑1 (MQ=255) gcCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACa < 1:27492536/67‑1 (MQ=255) ccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaataaaacgGGTATGGAGAAACa > 1:10647197‑M1/54‑67 (MQ=255) ccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACa > 1:34326545‑M1/54‑67 (MQ=255) ccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACa > 1:24129563‑M1/54‑67 (MQ=255) ccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACa > 1:33495733‑M1/54‑67 (MQ=255) ccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACa > 1:16567975‑M1/54‑67 (MQ=255) ccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAg < 1:6561289‑M1/15‑1 (MQ=255) cacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGt > 1:3707731‑M1/53‑68 (MQ=255) cacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGt > 1:13696871‑M1/53‑68 (MQ=255) cAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGt < 1:34024792/67‑1 (MQ=255) acttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTa < 1:32515713‑M1/17‑1 (MQ=255) cttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTag > 1:25200406‑M1/51‑68 (MQ=255) tcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTagag < 1:8982327‑M1/20‑1 (MQ=255) caaaaaagcgcgatttttcttcatgagttcctccatccaaaaaaacgGGTATGGAGAAACAGTagaga > 1:2438451‑M1/48‑68 (MQ=255) aaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGt > 1:4011939‑M1/46‑68 (MQ=255) aaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGtt < 1:31274922‑M1/24‑1 (MQ=255) ttCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGc < 1:17255204/68‑1 (MQ=255) aagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGc > 1:2206469‑M1/43‑68 (MQ=255) aagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGc > 1:26918310‑M1/43‑68 (MQ=255) aagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAAAAGTAGAGAGTTGc > 1:14192132‑M1/43‑68 (MQ=255) agcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCg < 1:10282886‑M1/27‑1 (MQ=255) aTACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATaa > 1:23917984/1‑68 (MQ=255) tACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATaaa > 1:20519836/1‑68 (MQ=255) gatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATaa > 1:4686285‑M1/37‑67 (MQ=255) aCCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACa > 1:25976283/1‑49 (MQ=255) cccGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATaaaaa > 1:32929194/1‑68 (MQ=255) ccGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATaaaaa > 1:5350547/1‑67 (MQ=255) ccGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATaaaaa > 1:27915319/1‑67 (MQ=255) ccGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATaaaaa > 1:30702081/1‑67 (MQ=255) ccGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATaaaaa > 1:29790407/1‑67 (MQ=255) ggCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCg < 1:19932538/68‑1 (MQ=255) tcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCg < 1:2351848‑M1/37‑1 (MQ=255) ttcatgaattcctccatccaaaaaaacgGGTTTGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCa < 1:23301473‑M1/40‑1 (MQ=255) ttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCa > 1:22202921‑M1/29‑68 (MQ=255) gcCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCa < 1:18314032/68‑1 (MQ=255) tcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAg > 1:15829821‑M1/28‑68 (MQ=255) ccGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGt < 1:7599391/64‑1 (MQ=255) catgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAgg > 1:11398963‑M1/27‑68 (MQ=255) catgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAgg > 1:23060586‑M1/27‑68 (MQ=255) catgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAgg > 1:21355153‑M1/27‑68 (MQ=255) catgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAgg > 1:7339444‑M1/27‑68 (MQ=255) attcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAgg > 1:8209564‑M1/22‑67 (MQ=255) cccGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAgg < 1:31865328/66‑1 (MQ=255) cccGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGa > 1:14659889/1‑67 (MQ=255) cctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc > 1:31481984‑M1/19‑68 (MQ=255) cctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc > 1:1855192‑M1/19‑68 (MQ=255) cctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc > 1:15223543‑M1/19‑68 (MQ=255) ctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCg > 1:21734864‑M1/18‑68 (MQ=255) tccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGgatctgc > 1:19589074‑M1/17‑65 (MQ=255) tccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc < 1:701233‑M1/50‑1 (MQ=255) tccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc < 1:6807407‑M1/50‑1 (MQ=255) tccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc < 1:8364433‑M1/50‑1 (MQ=255) tccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc < 1:5130847‑M1/50‑1 (MQ=255) cACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc > 1:24574824/1‑66 (MQ=255) ccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCt < 1:6259411‑M1/53‑1 (MQ=255) ccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCt > 1:12617868‑M1/16‑68 (MQ=255) aCGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCt > 1:969273/1‑68 (MQ=255) tccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAAt > 1:16006127‑M1/13‑68 (MQ=255) gTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTaa > 1:17866978/1‑66 (MQ=255) ccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTaa < 1:12103928‑M1/55‑1 (MQ=255) aCCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTAt > 1:28177161/1‑68 (MQ=255) aaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATg < 1:27170346‑M1/62‑1 (MQ=255) aaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATgg > 1:19057680‑M1/6‑68 (MQ=255) aaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATgg > 1:10006117‑M1/6‑68 (MQ=255) aacgGCTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGa > 1:29041158‑M1/5‑68 (MQ=255) aGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATa < 1:20981157/67‑1 (MQ=255) | TGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATAAA > CP009273/66493‑66627 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |