| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 66560 = | 290 (0.700) | 464 (1.840) +CGTTTTTTTGGATGGAGGAATT |
44/68 | NT | 65.8% | intergenic (‑28/‑314) | araD/araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| ? | CP009273 | = 3509273 | 504 (1.220) | intergenic (‑1/+106) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring | |||||
Only 100 of 1353 total aligned reads displayed.
TTAATATCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCA > CP009273/3509208‑3509339 | ttAATATCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGa > 1:6881092‑M2/1‑66 (MQ=255)ttAATATCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGa > 1:32861167‑M2/1‑66 (MQ=255)ttAATATCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCt < 1:5681383/68‑1 (MQ=255) aaTATCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaatt > 1:17147117‑M2/1‑64 (MQ=255) aaTATCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGa < 1:26292270/68‑1 (MQ=255) aaTATCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGa < 1:15527660/68‑1 (MQ=255) atatCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaatt < 1:29055506‑M2/67‑5 (MQ=255) tatCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGact < 1:8739514/68‑1 (MQ=255) tatCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGact < 1:23515371/68‑1 (MQ=255) tatCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGact > 1:16938885/1‑68 (MQ=255) atcatcAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattccc < 1:31601510‑M2/68‑8 (MQ=255) atcatcAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcc < 1:22487885‑M2/67‑7 (MQ=255) atcatcAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcc < 1:11836639‑M2/67‑7 (MQ=255) atcatcAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGacta > 1:93829/1‑68 (MQ=255) atcatcAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGacta < 1:23270317/68‑1 (MQ=255) atcatcAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGacta > 1:347016/1‑68 (MQ=255) atcatcAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGAGTTTTCTTCATGaattcc < 1:31866118‑M2/67‑7 (MQ=255) catcaAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGactaac < 1:12969587/68‑1 (MQ=255) atcaAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGactaact > 1:4069074/1‑68 (MQ=255) tcaAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccat > 1:22926920‑M2/1‑57 (MQ=255) caAGCAGGGGATACTTGCCCCCTGCCCACTTCAAATAAGCGCGATTTTTCTTCATGCTGActaactaa < 1:27343706/68‑1 (MQ=255) caAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGActaactaa < 1:6389398/68‑1 (MQ=255) gCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaa < 1:16442014‑M2/68‑16 (MQ=255) gCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaa < 1:16630732‑M2/68‑16 (MQ=255) gCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaa < 1:34066571‑M2/68‑16 (MQ=255) gCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaa < 1:23755798‑M2/68‑16 (MQ=255) aGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaa < 1:19044191‑M2/68‑18 (MQ=255) aTACTTGCCCCCTGCCCACTTCAAAAAAGCGCGTTTTTTCTTCATGaattcctccatcctaaaaaccg < 1:30246702‑M2/68‑23 (MQ=255) aTACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacg < 1:28707832‑M2/68‑23 (MQ=255) aTACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCtt < 1:17823677/67‑1 (MQ=255) aTACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCtt < 1:25827124/67‑1 (MQ=255) aTACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCt > 1:4493230/1‑66 (MQ=255) tACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTtct < 1:21765283/68‑1 (MQ=255) aCTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacggg > 1:10283841‑M2/1‑44 (MQ=255) cTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggt < 1:6025957‑M2/68‑26 (MQ=255) cTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggt < 1:30870777‑M2/68‑26 (MQ=255) cTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggt < 1:26497345‑M2/68‑26 (MQ=255) cTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTcc > 1:21290930/1‑68 (MQ=255) cTTGACCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTcc > 1:9014132/1‑68 (MQ=255) tGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtat < 1:21026267‑M2/68‑28 (MQ=255) tGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtat < 1:29796383‑M2/68‑28 (MQ=255) tGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGCCTAACTAATTACACCTTCTCCg > 1:2044299/1‑67 (MQ=255) tGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCg > 1:30057262/1‑67 (MQ=255) gCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatg > 1:1157254‑M2/1‑40 (MQ=255) gCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACATTCTCCGGc < 1:15206749/68‑1 (MQ=255) cccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatgg < 1:31389435‑M2/68‑30 (MQ=255) ccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatgga > 1:9732765‑M2/1‑38 (MQ=255) ccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatgga > 1:7874509‑M2/1‑38 (MQ=255) ccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatgga < 1:5171823‑M2/68‑31 (MQ=255) ccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatgga < 1:24386337‑M2/68‑31 (MQ=255) ccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCg > 1:256161/1‑64 (MQ=255) ccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCg > 1:1330352/1‑64 (MQ=255) ccccTGCCAACTTCAAAAAAGCGCGATTTTACTTAATGCTAACTAACTAATTACAAATTCTccc > 1:1435819/1‑63 (MQ=255) ccatGCACACTTCAAAAACGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCtgt < 1:33778920/65‑1 (MQ=255) ccTGCCCACTTCAAAAAAGCGCGAGTTTTCTTCATGaattcctccatcaaaaaaaacgggtatggaga < 1:22164983‑M2/68‑33 (MQ=255) cTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaa > 1:11302018‑M2/1‑35 (MQ=255) cTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaa > 1:6739457‑M2/1‑35 (MQ=255) gCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaac > 1:24986919‑M2/1‑33 (MQ=255) gCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaac > 1:12556207‑M2/1‑33 (MQ=255) gCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaac > 1:20675267‑M2/1‑33 (MQ=255) gCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGgag > 1:10015658/1‑68 (MQ=255) ccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacag < 1:187195‑M2/68‑38 (MQ=255) ccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaaca > 1:31220284‑M2/1‑31 (MQ=255) ccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaaca > 1:8210541‑M2/1‑31 (MQ=255) ccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaaca > 1:14155341‑M2/1‑31 (MQ=255) ccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaaca > 1:3053011‑M2/1‑31 (MQ=255) ccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaaca > 1:24129563‑M2/1‑31 (MQ=255) ccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaaca > 1:1943368‑M2/1‑31 (MQ=255) cACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagt > 1:2606494‑M2/1‑30 (MQ=255) cACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagt > 1:28002627‑M2/1‑30 (MQ=255) cACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagt > 1:13580686‑M2/1‑30 (MQ=255) cACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagt > 1:33150265‑M2/1‑30 (MQ=255) cACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagt > 1:10852394‑M2/1‑30 (MQ=255) aCTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagta < 1:18354618‑M2/68‑40 (MQ=255) aCTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagta < 1:32515713‑M2/68‑40 (MQ=255) cTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtag > 1:16129557‑M2/1‑28 (MQ=255) cAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagaga > 1:15818228‑M2/1‑25 (MQ=255) aaaaGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGAc < 1:34335252/68‑1 (MQ=255) aaaGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagtt < 1:13899965‑M2/67‑47 (MQ=255) aaaGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagtt < 1:26759187‑M2/67‑47 (MQ=255) aaaGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagtt < 1:21905394‑M2/67‑47 (MQ=255) aaaGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagtt < 1:25280829‑M2/67‑47 (MQ=255) aaaGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggaaaaacagtagagagtt < 1:7247389‑M2/67‑47 (MQ=255) aaaGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACa > 1:3807247/1‑68 (MQ=255) aaaGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACa > 1:14831358/1‑68 (MQ=255) aaGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAg < 1:20143509/68‑1 (MQ=255) gcgATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcga > 1:28461611‑M2/1‑16 (MQ=255) gcgATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCAt < 1:12052485/67‑1 (MQ=255) gcgATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCAt < 1:33535289/67‑1 (MQ=255) tttCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagc > 1:8498789‑M2/1‑10 (MQ=255) ttcttcATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcg > 1:12250060‑M2/1‑9 (MQ=255) ttcttcATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCt < 1:19899201/68‑1 (MQ=255) tcttcATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgt > 1:27169271‑M2/1‑8 (MQ=255) ttcATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtca > 1:17489433‑M2/1‑6 (MQ=255) ttcATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtca < 1:748365‑M2/68‑63 (MQ=255) tcATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtcag > 1:29439860‑M2/1‑5 (MQ=255) cATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtcagg > 1:27675376‑M2/1‑4 (MQ=255) cATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAgg < 1:475009/68‑1 (MQ=255) gCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCa > 1:5449115/1‑67 (MQ=255) gCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCa > 1:24750807/1‑67 (MQ=255) | TTAATATCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCA > CP009273/3509208‑3509339 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |