New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 442673 =337 (0.810)19 (0.060) 8/90 NT 5.8% coding (489/891 nt) cyoE protoheme IX farnesyltransferase
?CP009273 442734 = 343 (1.030)coding (428/891 nt) cyoE protoheme IX farnesyltransferase

Only 100 of 592 total aligned reads displayed.

TAAAGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGA  >  CP009273/442606‑442740
                                                                   |                                                                   
  aaGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                     >  1:7068613‑M1/1‑66 (MQ=255)
   aGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                     >  1:25045831‑M1/1‑65 (MQ=255)
   aGCGGAAAATGGCGATGGCATAGGAGTGACGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                     >  1:17494480‑M1/1‑65 (MQ=255)
    cgtttatagcctgtacatgaaacgccactctgtctacggcacgttgattggttcgctctccggCGCt                                                                  <  1:8094626‑M1/4‑1 (MQ=255)
         aaaTGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCC                                                             <  1:2067667‑M1/67‑1 (MQ=255)
          tagcctgtccatgaaacgccactctgtctacggcacgttgattggttcgctctccggCGCTGcgccgc                                                           >  1:14328160‑M1/58‑68 (MQ=255)
           aTGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCt                                                          >  1:5464651/1‑68 (MQ=255)
           aTGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCt                                                          <  1:4649081/68‑1 (MQ=255)
           aTGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCt                                                          <  1:30057805/68‑1 (MQ=255)
           aTGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCt                                                          <  1:32044935/68‑1 (MQ=255)
           aTGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCt                                                          <  1:31444485/68‑1 (MQ=255)
           aTGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCt                                                          <  1:14009676/68‑1 (MQ=255)
                gATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGa                                                     <  1:33772480/68‑1 (MQ=255)
                  tGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAAc                                                   <  1:9295342/68‑1 (MQ=255)
                     cATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCC                                                             <  1:1583810‑M1/55‑1 (MQ=255)
                      aTAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCAc                                               <  1:30398340/68‑1 (MQ=255)
                      aTAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCAc                                               <  1:2941759/68‑1 (MQ=255)
                      aTAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCAc                                               <  1:17318462/68‑1 (MQ=255)
                          gAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGt                                           >  1:6244940/1‑68 (MQ=255)
                          gAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCAGCGCCGCTATCGAACTCACCGGt                                           >  1:31624813/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCgg                                            <  1:25080491/66‑1 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:34386526/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:26445237/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:2364701/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:22814815/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:21711628/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:6609504/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:10199352/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:20220445/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:20059219/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:15943480/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:19287744/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATAGCTGCGCCTCTATCGAACTCACCggat                                          >  1:10857312/1‑66 (MQ=255)
                           aGTGAGGCAGCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCgg                                            <  1:17749699/66‑1 (MQ=255)
                            gTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCCCCGGtt                                          >  1:7529997/1‑67 (MQ=255)
                            gTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          <  1:279536/67‑1 (MQ=255)
                            gTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          <  1:6404043/67‑1 (MQ=255)
                            gTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          <  1:3732990/67‑1 (MQ=255)
                              gcggCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTAcc                                       <  1:6816179/66‑1 (MQ=255)
                              gAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTAcc                                       <  1:11540820/68‑1 (MQ=255)
                              gAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTAcc                                       <  1:10500337/68‑1 (MQ=255)
                               aGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTAcc                                       >  1:26070579/1‑67 (MQ=255)
                                ggCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGACCTCCCCCGTTACCGc                                     >  1:33050862/1‑68 (MQ=255)
                                ggCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCg                                      >  1:20394333/1‑67 (MQ=255)
                                ggCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc                                     >  1:18212136/1‑68 (MQ=255)
                                 gCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc                                     >  1:15103349/1‑67 (MQ=255)
                                  cATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGca                                    <  1:22072775/67‑1 (MQ=255)
                                  cATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc                                     <  1:2250441/66‑1 (MQ=255)
                                   aTCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGcaca                                  <  1:23888600/68‑1 (MQ=255)
                                   aTCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGcaca                                  <  1:13749828/68‑1 (MQ=255)
                                     cTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGt                                <  1:8751018/68‑1 (MQ=255)
                                      tGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTa                               <  1:1627956/68‑1 (MQ=255)
                                      tGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTa                               <  1:21327022/68‑1 (MQ=255)
                                      tGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTa                               <  1:19869245/68‑1 (MQ=255)
                                      tGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTa                               <  1:26680153/68‑1 (MQ=255)
                                       gCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTa                               >  1:10012998/1‑67 (MQ=255)
                                         cacaGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGc                             <  1:13427332/67‑1 (MQ=255)
                                          gcacgttgattggttcgctctccggCGCTGCGCCGCTATCGGACTCACCGGTTTCCGGCCAGTAGCCg                           <  1:11364463‑M1/43‑1 (MQ=255)
                                          acaGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCcggtgatcggctactgtgcggtacccggtgag                           >  1:28698975‑M1/1‑36 (MQ=255)
                                          acaGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCg                           >  1:4305900/1‑68 (MQ=255)
                                          acaGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCg                           >  1:4084924/1‑68 (MQ=255)
                                          acaGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCg                           >  1:1039654/1‑68 (MQ=255)
                                            aGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGa                          >  1:27418511/1‑67 (MQ=255)
                                              gCTGAAGATAGCCAGCAGGATCGCTGCGCCGCcggtgatcggctaatgtgcggtaaccggtgagttcg                       >  1:12795345‑M1/1‑32 (MQ=255)
                                              gCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGa                          >  1:24926621/1‑65 (MQ=255)
                                              gCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATc                        >  1:9617280/1‑67 (MQ=255)
                                               cTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCa                       <  1:28290588/67‑1 (MQ=255)
                                               cTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCa                       <  1:12433432/67‑1 (MQ=255)
                                                 gAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACcg                    <  1:8310779/68‑1 (MQ=255)
                                                    gATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg                 <  1:33591422‑M2/68‑4 (MQ=255)
                                                    gATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg                 <  1:2975452‑M2/68‑4 (MQ=255)
                                                    gATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg                 <  1:2461928‑M2/68‑4 (MQ=255)
                                                    gATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg                 <  1:29088808‑M2/68‑4 (MQ=255)
                                                    gATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg                 <  1:26953630‑M2/68‑4 (MQ=255)
                                                    gATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTAAACGGTTACCGCAAAGTAGCCGATCACCGgcg                 <  1:22597920‑M2/68‑4 (MQ=255)
                                                      tAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggc               >  1:32716522‑M2/1‑63 (MQ=255)
                                                      tAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggc               >  1:2311106‑M2/1‑63 (MQ=255)
                                                      tAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggc               >  1:24236222‑M2/1‑63 (MQ=255)
                                                      tAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggc               >  1:15684304‑M2/1‑63 (MQ=255)
                                                        gCCAGCAGGATCGCTGCGCCGCcggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgc             >  1:34067153‑M1/1‑22 (MQ=255)
                                                        gCCAGCAGGATCGCTGCGCCGCcggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgc             >  1:4905855‑M1/1‑22 (MQ=255)
                                                        gCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgc             <  1:18474688‑M2/68‑8 (MQ=255)
                                                        gCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgc             <  1:16514121‑M2/68‑8 (MQ=255)
                                                        gCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgc             <  1:5009146‑M2/68‑8 (MQ=255)
                                                            gcagGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagc          <  1:25498939‑M2/67‑11 (MQ=255)
                                                              agGATGGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagc          >  1:19671364‑M2/1‑55 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagcg         >  1:5583053‑M2/1‑55 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagc          >  1:30516135‑M2/1‑55 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAgcgc        <  1:26236877/67‑1 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGcc       >  1:16794140/1‑68 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGcc       >  1:21112338/1‑68 (MQ=255)
                                                              agGAGCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagc          >  1:30997983‑M2/1‑55 (MQ=255)
                                                                 aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGcc       <  1:32894241/65‑1 (MQ=255)
                                                                 aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGcc       <  1:30765564/65‑1 (MQ=255)
                                                                 aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCgg     <  1:14558934/67‑1 (MQ=255)
                                                                  gcgCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagcgatcct    <  1:13127114‑M2/66‑17 (MQ=255)
                                                                   CGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga  >  1:25845063‑M1/1‑68 (MQ=255)
                                                                   CGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga  <  1:1112451‑M1/68‑1 (MQ=255)
                                                                   CGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga  >  1:12008824‑M1/1‑68 (MQ=255)
                                                                   CGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga  >  1:14922470‑M1/1‑68 (MQ=255)
                                                                   |                                                                   
TAAAGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGA  >  CP009273/442606‑442740

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.