New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | 442673 = | 337 (0.810) | 19 (0.060) | 8/90 | NT | 5.8% | coding (489/891 nt) | cyoE | protoheme IX farnesyltransferase |
? | CP009273 | 442734 = | 343 (1.030) | coding (428/891 nt) | cyoE | protoheme IX farnesyltransferase |
Only 100 of 628 total aligned reads displayed.
AGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGA > CP009273/442668‑442800 | agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAgcgc < 1:30242610/67‑1 (MQ=255) agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAgcgc < 1:26236877/67‑1 (MQ=255) agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAgcgc < 1:21442869/67‑1 (MQ=255) agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGcc > 1:21112338/1‑68 (MQ=255) ggCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGga < 1:16359736‑M1/66‑1 (MQ=255) aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGcc < 1:14489474/65‑1 (MQ=255) aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGga > 1:8219721/1‑68 (MQ=255) CGCTGCGCCGCTATCGAACTCACCGGTTACCGCCCAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga > 1:16626312‑M1/1‑68 (MQ=255) CGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga < 1:1112451‑M1/68‑1 (MQ=255) CGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga > 1:12008824‑M1/1‑68 (MQ=255) CGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga > 1:14922470‑M1/1‑68 (MQ=255) GCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGagag > 1:24066232‑M1/1‑68 (MQ=255) GCTGCGCCGATATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga < 1:5328667‑M1/67‑1 (MQ=255) TGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCg < 1:25880502‑M1/68‑1 (MQ=255) TGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCg < 1:34052441‑M1/68‑1 (MQ=255) GCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGaa < 1:17379498‑M1/67‑1 (MQ=255) GCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGaa < 1:34292142‑M1/67‑1 (MQ=255) GCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCCGCGGCGCAGCGCCGGAGAGCgac < 1:28546954‑M1/67‑2 (MQ=255) CGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAAcc > 1:25319143‑M1/1‑67 (MQ=255) CGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAAcc > 1:30849031‑M1/1‑67 (MQ=255) GCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCaa > 1:8479006‑M1/1‑68 (MQ=255) cGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAAc < 1:24949973/68‑1 (MQ=255) aaCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt > 1:32377729/1‑68 (MQ=255) aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt > 1:5877341/1‑67 (MQ=255) aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt > 1:26804421/1‑67 (MQ=255) aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt > 1:4826474/1‑67 (MQ=255) cggctactgggcggtaaccggtgagcgcgatagcggcgcagcgCCGGAGAGCGAACCAATCAACGTGc < 1:33841301‑M2/25‑1 (MQ=255) cggctactggccggaaaccggtgagtccgatagcggcgcagcgCCGGAGAGCGAACCAATCAACGTGc < 1:11364463‑M2/25‑1 (MQ=255) cTCACCGGTTACCGTACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:18938006/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:7616782/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:1284748/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:25646701/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:25102887/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:23841741/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:32639385/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:7106605/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:8827504/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:19401213/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:5040932/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:33443469/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:17699245/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:17270169/68‑1 (MQ=255) aCCGGTTACCGCACAGTAGCCGATCACCAGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGt < 1:6865372/68‑1 (MQ=255) ccGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTa > 1:16174321/1‑68 (MQ=255) cGGGTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAg < 1:28034938/68‑1 (MQ=255) actgtgcggtaaccggtgcgtgcgatagcggcgcagcgCCGGAGAGCGAACCAATCAACGTGCCGTAg < 1:21748162‑M2/30‑1 (MQ=255) ggTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAg > 1:5954445/1‑67 (MQ=255) ttACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGAc < 1:29527296/67‑1 (MQ=255) tACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACa < 1:31337879/67‑1 (MQ=255) cGCACAGTAGCCTATCACCGGAGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGt < 1:22489537/68‑1 (MQ=255) cGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGt < 1:1548597/68‑1 (MQ=255) cacaGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTg > 1:15848418/1‑67 (MQ=255) acaGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGc > 1:30714627/1‑68 (MQ=255) aGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGt < 1:31037781/68‑1 (MQ=255) gTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGtt > 1:29885417/1‑68 (MQ=255) aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt < 1:13683954/67‑1 (MQ=255) aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt < 1:20210526/67‑1 (MQ=255) aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt < 1:32872628/67‑1 (MQ=255) aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt < 1:33167424/67‑1 (MQ=255) gCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAGCCAATCAACGTGCCGTAGACAGAGTGGCGTTTCa > 1:19880319/1‑68 (MQ=255) gCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCa > 1:32207431/1‑68 (MQ=255) gCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCa > 1:10860413/1‑68 (MQ=255) gCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCa > 1:30450070/1‑68 (MQ=255) cGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATg > 1:31497969/1‑68 (MQ=255) cGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATg < 1:10035576/68‑1 (MQ=255) cGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATg > 1:19534809/1‑68 (MQ=255) cGATCACCGGCGGCGCAGCGCAGGAGAGCGCACCAATCAACGTGCCGTAGACAGCGTGGCGTTTCa > 1:18323510/1‑66 (MQ=255) gATCACCGGCGGCGGAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGt < 1:6556451/68‑1 (MQ=255) gATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGt < 1:22083146/68‑1 (MQ=255) aTCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCgtgt > 1:29444900/1‑67 (MQ=255) aTCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGt > 1:23328841/1‑67 (MQ=255) aCCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAg > 1:26681031/1‑68 (MQ=255) aCCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAg > 1:13297528/1‑68 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:44630/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:426304/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:5619643/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:9509317/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:974356/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:3741765/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:17941414/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:10327522/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:11467989/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:11665389/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:12617800/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:13918859/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:22826598/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:2642875/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:27092524/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:27509161/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:28689586/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:31879048/68‑1 (MQ=255) tagcggcgcagcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACagc < 1:15132956‑M2/54‑2 (MQ=255) cggcggCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGc < 1:16858468/68‑1 (MQ=255) cggcggCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGc < 1:29096548/68‑1 (MQ=255) cggcgcagcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCta < 1:6278683‑M2/57‑1 (MQ=255) cggcgcagcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCta < 1:3505843‑M2/57‑1 (MQ=255) ggcgcagcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCtat < 1:10515942‑M2/58‑1 (MQ=255) agcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACg < 1:2047572‑M2/63‑1 (MQ=255) agcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACg < 1:92416‑M2/63‑1 (MQ=255) gCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGa < 1:7998163‑M2/67‑1 (MQ=255) | AGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGA > CP009273/442668‑442800 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |