| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 519440 = | 279 (0.670) | 17 (0.050) | 12/96 | NT | 5.5% | coding (724/4281 nt) | rhsD | Rhs family putative polymorphic toxin |
| ? | CP009273 | 519532 = | 348 (0.980) | coding (816/4281 nt) | rhsD | Rhs family putative polymorphic toxin | |||||
Only 100 of 361 total aligned reads displayed.
TGACGTACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCT > CP009273/519375‑519507 | tGACGTACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCcggg < 1:18791859/68‑1 (MQ=255)ggatacccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaggg > 1:4381785‑M1/66‑68 (MQ=255)ggatacccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaggg > 1:1982208‑M1/66‑68 (MQ=255) cGTACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCcgggcg < 1:9341907/67‑1 (MQ=255) cGTACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCcgggcg < 1:3608056/67‑1 (MQ=255) gTACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCcgggcggg > 1:6142508/1‑68 (MQ=255) gTACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCcgggcggg > 1:31767424/1‑68 (MQ=255) acccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCggg < 1:342365‑M1/7‑1 (MQ=255) cccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCGGGa > 1:21384117‑M1/61‑68 (MQ=255) cccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCGGGa < 1:10881170‑M1/8‑1 (MQ=255) aCCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAg > 1:4995024/1‑68 (MQ=255) aCCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAg > 1:32107428/1‑68 (MQ=255) aCCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAg > 1:14374660/1‑68 (MQ=255) aCCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAg > 1:31912271/1‑68 (MQ=255) cctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCGGGa < 1:31068983‑M1/8‑1 (MQ=255) ccGGCGTGAGGCCGCCGGTGATTTCCCCGGCCAGGTCACCGGCGTGACGGACGGTGCCGGGCGGGAGt < 1:4858017/68‑1 (MQ=17) ccGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGt < 1:12994147/68‑1 (MQ=255) ccGGCGGGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGt < 1:30349417/68‑1 (MQ=255) ggCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGtt > 1:25180315/1‑67 (MQ=255) ggCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGtt > 1:22862360/1‑67 (MQ=255) ggCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGtt > 1:20009580/1‑67 (MQ=255) cGTGAGGCCGCCGGTGCCCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCg > 1:9124542/1‑68 (MQ=255) cGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCg > 1:15902807/1‑68 (MQ=255) cGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCg > 1:13855136/1‑68 (MQ=255) tggAGGCCGCCGGTGACCTGGCCGGGGAACTCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGt < 1:30623534/66‑1 (MQ=255) gggAGGCCGCCGGTGACCTGGCCGGGGACATCACCGGCGTGACGGACGGGGCCGGGCGGGAGTTCCGt < 1:26730645/66‑1 (MQ=37) gTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGt < 1:24278267/68‑1 (MQ=255) gTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGt < 1:1898089/68‑1 (MQ=255) gTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGt < 1:26933345/68‑1 (MQ=255) gTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGGGACGGACGGTGCCGGGCGGGAGTTCCGt < 1:740178/68‑1 (MQ=255) tGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCg > 1:23008094/1‑66 (MQ=255) ggCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTgg > 1:19431437/1‑68 (MQ=255) ggCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTgg > 1:21920173/1‑68 (MQ=255) ggCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTgg > 1:31525364/1‑68 (MQ=255) gccgccGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCGGTCTGGt > 1:33820764/1‑68 (MQ=255) gccgccGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGt > 1:6366619/1‑68 (MQ=255) gccgccGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGt > 1:33250834/1‑68 (MQ=255) gccgccGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGt > 1:11570817/1‑68 (MQ=255) gccgccGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGt > 1:1730038/1‑68 (MQ=255) gcgccgGGGACCTGCCCGGGGACAGCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTgg < 1:29565353/65‑1 (MQ=25) ccgccgGTGACCTGGCCGGGGAACTCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTgg < 1:11991674/66‑1 (MQ=255) ccgccgGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTgg < 1:16938441/66‑1 (MQ=255) ccgccgGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTgg < 1:5445603/66‑1 (MQ=255) ccgccgGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGt < 1:24597438/67‑1 (MQ=255) ccgccgGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGt < 1:14883878/67‑1 (MQ=255) ccgccgGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGt < 1:12773895/67‑1 (MQ=255) ccgccgGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCAGTCTGGt < 1:7969244/67‑1 (MQ=255) acgccgGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGt > 1:23265336/2‑67 (MQ=255) gccgGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGt > 1:14942973/1‑65 (MQ=255) cgGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTg < 1:12420335/67‑1 (MQ=255) cgGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGa < 1:13248690/68‑1 (MQ=255) cggtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCGGGAGTTCCGTCTGGTGCTGAcc > 1:33598948‑M1/42‑68 (MQ=255) ccgggCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACg < 1:18519709/64‑1 (MQ=255) ccTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGc > 1:10270564/1‑68 (MQ=255) ccTGGCCGGGGAAATCACCGGCGTGACGGACGGCGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACg < 1:20270663/67‑1 (MQ=255) ggCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCTCGCAgg < 1:5875353/68‑1 (MQ=255) gCCGGGGACCTCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAgg < 1:33943410/67‑1 (MQ=255) ccGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGgc > 1:32885222/1‑67 (MQ=255) gAAATCCCCGGCGGGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGc < 1:9680059/67‑1 (MQ=255) gAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGc < 1:1782117/67‑1 (MQ=255) gAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGc < 1:20594873/67‑1 (MQ=255) gAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGc < 1:21639206/67‑1 (MQ=255) gAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGc < 1:30907944/67‑1 (MQ=255) gAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCg > 1:29162794/1‑68 (MQ=255) gAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCg > 1:29966593/1‑68 (MQ=255) cacaTCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGGGCTGACCACGCAGGCGCAGc < 1:20726317/64‑1 (MQ=255) gtcggggaacgctgaggctgagagaGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGt > 1:10611119‑M1/26‑67 (MQ=255) ccccACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGt < 1:15316761/64‑1 (MQ=255) aaTCACCGGCGTGACGTACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGt < 1:32439073/67‑1 (MQ=255) aaTCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGt < 1:12688581/67‑1 (MQ=255) aaTCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGt < 1:27985515/67‑1 (MQ=255) aaTCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGt < 1:4716122/67‑1 (MQ=255) aaTCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGt < 1:27669802/67‑1 (MQ=255) tCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCg > 1:8185558/1‑68 (MQ=255) tCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCg < 1:7138955/68‑1 (MQ=255) ccGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGaa > 1:17882391/1‑68 (MQ=255) ccGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGaa > 1:16731601/1‑68 (MQ=255) gTGACGGACTGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGc < 1:27451327/68‑1 (MQ=255) gTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAgg < 1:2237805/67‑1 (MQ=255) gTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAgg < 1:8951467/67‑1 (MQ=255) gTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGc < 1:22285171/68‑1 (MQ=255) gTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGc < 1:7517595/68‑1 (MQ=255) gTGACGGACGGGGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAgg < 1:23632508/67‑1 (MQ=255) gacggacgGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGccc < 1:21092906/68‑1 (MQ=255) gacggacgGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGccc > 1:25496776/1‑68 (MQ=255) gacggacgGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGcc < 1:2815045/67‑1 (MQ=255) ggacggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGc > 1:27260813/1‑67 (MQ=255) acggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCa > 1:14230335/1‑66 (MQ=255) acggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCa > 1:25938550/1‑66 (MQ=255) tgagagaGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACct > 1:6570547‑M1/8‑68 (MQ=255) cggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCAcc < 1:15540398/67‑1 (MQ=255) cggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCAcc < 1:4018786/67‑1 (MQ=255) cggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCAcc < 1:25003716/67‑1 (MQ=255) ggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACctc > 1:18157999/1‑68 (MQ=255) ggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACctc < 1:13454709/68‑1 (MQ=255) ggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACctc < 1:11127446/68‑1 (MQ=255) tGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACctct < 1:29765981/67‑1 (MQ=255) tGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACctct < 1:24883773/67‑1 (MQ=255) gCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCtt < 1:2336557/67‑1 (MQ=255) cgggcgggAGTTCCGGCTTGTGCTGACCTCGCTGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCg < 1:3129420/67‑1 (MQ=255) | TGACGTACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCT > CP009273/519375‑519507 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |