| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 519440 = | 279 (0.670) | 17 (0.050) | 12/96 | NT | 5.5% | coding (724/4281 nt) | rhsD | Rhs family putative polymorphic toxin |
| ? | CP009273 | 519532 = | 348 (0.980) | coding (816/4281 nt) | rhsD | Rhs family putative polymorphic toxin | |||||
Only 100 of 481 total aligned reads displayed.
CACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCC > CP009273/519466‑519599 | cACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctc < 1:16386804/68‑1 (MQ=255) aCGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctct < 1:2382688/68‑1 (MQ=255) aCGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctct < 1:31915513/68‑1 (MQ=255) aCGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctct < 1:3159494/68‑1 (MQ=255) aCGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctct < 1:21017814/68‑1 (MQ=255) aCGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctct < 1:19117087/68‑1 (MQ=255) aCGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctct < 1:21171209/68‑1 (MQ=255) aCGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctct < 1:11822025/68‑1 (MQ=255) aCGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctct < 1:25269460/68‑1 (MQ=255) aCGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctct < 1:11110670/68‑1 (MQ=255) cAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCtctctc > 1:20577077/1‑68 (MQ=255) cAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCtctctc > 1:26152084/1‑68 (MQ=255) cgcAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTctcagc < 1:11642153/67‑1 (MQ=255) gcAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTctcagcc > 1:25784005/1‑67 (MQ=255) gcAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTctcagcc < 1:2238687/67‑1 (MQ=255) gcAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTctcagcc > 1:27699422/1‑67 (MQ=255) aGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTctcagcctcc > 1:13902857/1‑67 (MQ=255) aGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTctcagcctca > 1:27467462/1‑68 (MQ=255) aGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTctcagccgca > 1:31169732/1‑68 (MQ=255) cGTGCGGAAGAGGCCCGCACCTCTTCGCTATGTTCTTCTGACAGTTCCCGCCCTCTctcagcctcagc > 1:14590758/1‑68 (MQ=255) cGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTctcagcctccgc > 1:34072438/1‑68 (MQ=255) cGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTctcagcctcagc > 1:8246759/1‑68 (MQ=255) gCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGtt < 1:18724587/68‑1 (MQ=255) gCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGtt < 1:7560487/68‑1 (MQ=255) gCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGtt < 1:33770674/68‑1 (MQ=255) gCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGtt < 1:14863157/68‑1 (MQ=255) ggAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcc < 1:13327171/68‑1 (MQ=255) ggAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcc < 1:24338550/68‑1 (MQ=255) ggAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcc < 1:6093604/68‑1 (MQ=255) ggAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcc < 1:14332116/68‑1 (MQ=255) ggAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcc < 1:33069590/68‑1 (MQ=255) ggAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcc < 1:31404820/68‑1 (MQ=255) agcggCCCGCACCTCTTCGCTATCTTCTGCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcccc > 1:24153207/4‑67 (MQ=255) agagGCCCGCACCTCTTTGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcccc < 1:30088461/67‑1 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcccc < 1:13786899/67‑1 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcccc < 1:25456457/67‑1 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcccc < 1:29600940/67‑1 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcccc < 1:22548462/67‑1 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCg > 1:7284167/1‑68 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCg > 1:9750060/1‑68 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCg > 1:20161117/1‑68 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTATCAGCCTCAGCGTTCCCCg > 1:29065751/1‑68 (MQ=255) gagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCg > 1:31293682/1‑67 (MQ=255) gagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCg > 1:12897916/1‑67 (MQ=255) agGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGa > 1:2859428/1‑67 (MQ=255) ggCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGac < 1:19846343/67‑1 (MQ=255) acgctgcgcctgcgtggtcagcaccagacggaactcccgcccTCTCTCAGCCTCAGCGTTCCCCGac > 1:21710159‑M2/43‑67 (MQ=255) acgctgcgcctgcgtggtcagcaccagacggaactcccgcccTCTCTCAGCCTCAGCGTTCCCCGac > 1:10611119‑M2/43‑67 (MQ=255) acgctgcgcctgcgtggtcagcaccagacggaactcccgcccTCTCTCAGCCTCAGCGTTCCCCGac > 1:15093‑M2/43‑67 (MQ=255) acgctgcgcctgcgtggtcagcaccagacggaactcccgcccTCTCTCAGCCTCAGCGTTCCCCGac > 1:32675974‑M2/43‑67 (MQ=255) gctgcgcctgcgtggtcagcaccagacggaactcccgcccTCTCTCAGCCTCAGCGTTCCCCGacac > 1:18884160‑M2/41‑67 (MQ=255) cccGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCACCGccac > 1:4989263/1‑67 (MQ=255) aCCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGc > 1:8858112/1‑67 (MQ=255) aCCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGc < 1:22847048/67‑1 (MQ=255) aCCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGc < 1:19510416/67‑1 (MQ=255) aCCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGc < 1:1694469/67‑1 (MQ=255) aCCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGc < 1:15405577/67‑1 (MQ=255) ccTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGccc < 1:11478746/68‑1 (MQ=255) ctTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGt < 1:6366808/68‑1 (MQ=255) ctTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGt < 1:21469079/68‑1 (MQ=255) ctTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGt < 1:10262484/68‑1 (MQ=255) ctTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGt < 1:9149898/68‑1 (MQ=255) ctTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGt < 1:15947096/68‑1 (MQ=255) ttCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTa < 1:26551751/68‑1 (MQ=255) tCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTa > 1:23445318/1‑67 (MQ=255) tCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTAc < 1:17853254/68‑1 (MQ=255) tCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTAc < 1:3677822/68‑1 (MQ=255) tCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTAc < 1:5655076/68‑1 (MQ=255) tCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTAc < 1:19414101/68‑1 (MQ=255) ggtcagcaccagacggaactcccgcccTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:33598948‑M2/28‑68 (MQ=255) gCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:10069115/1‑68 (MQ=255) gCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:25549889/1‑68 (MQ=255) gCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:2688918/1‑68 (MQ=255) tATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGaa > 1:4468825/1‑68 (MQ=255) tATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGa < 1:17472707/67‑1 (MQ=255) tATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGa < 1:8714053/67‑1 (MQ=255) aTCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCCGTACCGAAt > 1:30997546/1‑68 (MQ=255) cttcttctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATAc > 1:468926/1‑68 (MQ=255) cttcttctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATAc > 1:4379223/1‑68 (MQ=255) cttctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGc < 1:15744448/68‑1 (MQ=255) cttctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGc < 1:5110129/68‑1 (MQ=255) ttctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGcc < 1:28388886/68‑1 (MQ=255) tctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGccc < 1:23217113/68‑1 (MQ=255) tctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGcc > 1:9516432/1‑67 (MQ=255) tctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGcc > 1:29777148/1‑67 (MQ=255) aCAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACCCTGCCCGGTACCGAATACGGCCCCgcc > 1:3937285/1‑66 (MQ=255) aCAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGAc > 1:32165617/1‑68 (MQ=255) aCAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGAc > 1:21966555/1‑68 (MQ=255) aCAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGAc > 1:30618114/1‑68 (MQ=255) aCAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGAc > 1:8455961/1‑68 (MQ=255) aCAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGAc > 1:34370858/1‑68 (MQ=255) cAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACa > 1:30011286/1‑68 (MQ=255) actcccgcccTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAgg > 1:24549055‑M2/11‑68 (MQ=255) ctcccgcccTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAggg > 1:29121908‑M2/10‑68 (MQ=255) tcccgcccTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAgg < 1:6517317‑M2/58‑1 (MQ=255) cccTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACCGGGGTATcc > 1:27082525‑M2/4‑68 (MQ=255) cccTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATcc > 1:6737155‑M2/4‑68 (MQ=255) cccTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATcc > 1:12283874‑M2/4‑68 (MQ=255) tctctcAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGcc < 1:25141045/68‑1 (MQ=255) tctctcAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGcc < 1:29312134/68‑1 (MQ=255) | CACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCC > CP009273/519466‑519599 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |