| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 605591 = | NA (NA) | 7 (0.020) | 5/98 | NT | NA | noncoding (19/98 nt) | RIP54 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP54 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 2648336 = | NA (NA) | noncoding (8/97 nt) | RIP183 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP183 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 785 total aligned reads displayed.
CGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTC > CP009273/605524‑605656 | atccggcctacaaattctgcaaattcaacaaattgcgaatccgttgtaggcctgataagcgtagcgca < 1:18128306‑M1/1‑1 (MQ=255) gTAGTTTTCATATCGACCATATTCGAGTCTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTa > 1:6382857/1‑67 (MQ=255) gTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTa < 1:16216539/67‑1 (MQ=255) gTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTa > 1:24950801/1‑67 (MQ=255) gTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTa < 1:12813226/67‑1 (MQ=255) ggcctacaaattctgcaaattcaacaaattgcgaatcccttgtaggcctgataagcgtagcgcATCAg > 1:28233848‑M1/64‑68 (MQ=255) ggcctacaaattctgcaaattcaacaaattgcgaatcccttgtaggcctgataagcgtagcgcATCAg > 1:24092315‑M1/64‑68 (MQ=255) gTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAg > 1:8109966/1‑68 (MQ=255) gcctacaaattctgcaaattcaacaaattgcgaatcccttgtaggcctgataagcgtagcgcATCAg < 1:12350376‑M1/5‑1 (MQ=255) tttCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:24344637/67‑1 (MQ=255) tttCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:18552888/67‑1 (MQ=255) tttCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:34055280/67‑1 (MQ=255) tttCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:22489667/67‑1 (MQ=255) tttCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:23470773/67‑1 (MQ=255) tttCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:14403504/67‑1 (MQ=255) tttCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:32067388/67‑1 (MQ=255) tttCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:1306427/67‑1 (MQ=255) tttCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:25441132/67‑1 (MQ=255) tttCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:10947894/67‑1 (MQ=255) tttCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAgg > 1:29895282/1‑67 (MQ=255) tttCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGc < 1:32482875/68‑1 (MQ=255) tCATATGGACCTTATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCt < 1:17405304/68‑1 (MQ=255) tCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCt < 1:8912428/68‑1 (MQ=255) atatCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTAc < 1:30253875/68‑1 (MQ=255) tatCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACa > 1:21223389/1‑68 (MQ=255) tatCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACa > 1:2018981/1‑68 (MQ=255) tatCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACa > 1:4580447/1‑68 (MQ=255) tatCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACa > 1:7082438/1‑68 (MQ=255) tatCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACa > 1:13928235/1‑68 (MQ=255) tatCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATAAGGCCTACa > 1:31674350/1‑68 (MQ=255) gACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGt < 1:28499410/68‑1 (MQ=255) gACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGt < 1:28027634/68‑1 (MQ=255) gACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGt < 1:27326891/68‑1 (MQ=255) gACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGt < 1:2671982/68‑1 (MQ=255) gACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGt < 1:26453746/68‑1 (MQ=255) gACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGt < 1:12164022/68‑1 (MQ=255) gACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGt < 1:25936681/68‑1 (MQ=255) gACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGt < 1:25629235/68‑1 (MQ=255) gACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGt < 1:11847198/68‑1 (MQ=255) gACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGt < 1:25263139/68‑1 (MQ=255) gACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGt < 1:5048282/68‑1 (MQ=255) gACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGt < 1:783774/68‑1 (MQ=255) gACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGt < 1:29193447/68‑1 (MQ=255) gACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGt < 1:10015455/68‑1 (MQ=255) gACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGt < 1:19580052/68‑1 (MQ=255) gACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGt < 1:15285986/68‑1 (MQ=255) gACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGt < 1:32999312/68‑1 (MQ=255) gACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGt < 1:6642324/68‑1 (MQ=255) gACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGt < 1:33897020/68‑1 (MQ=255) gACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGt < 1:5849874/68‑1 (MQ=255) gACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGt < 1:21630873/68‑1 (MQ=255) gACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGt < 1:19748245/68‑1 (MQ=255) gACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGt < 1:17016429/68‑1 (MQ=255) aCCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGt > 1:20704525/1‑67 (MQ=255) cATATTCGAGACTTATGACAAACGCAAAACTGCCTGATGCGCTACTCTTATCAGGCCTACATGGTCCt < 1:27590152/68‑1 (MQ=17) cATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGt > 1:27084368/1‑65 (MQ=255) tatTCGAGACTGATTACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGc < 1:1513938/68‑1 (MQ=255) tatTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTTTCAGGCCTACATGGTCCTGc < 1:3962108/68‑1 (MQ=255) tatTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGc < 1:34467388/68‑1 (MQ=255) tatTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGc < 1:30991483/68‑1 (MQ=255) tatTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGc < 1:23623926/68‑1 (MQ=255) tatTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGc < 1:29545550/68‑1 (MQ=255) tatTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGc < 1:10637849/68‑1 (MQ=255) tatTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGc < 1:30515447/68‑1 (MQ=255) tCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAat > 1:10368737/1‑68 (MQ=255) tCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAat < 1:9573116/68‑1 (MQ=255) tCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAat > 1:12032340/1‑68 (MQ=255) tCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAat > 1:14758645/1‑68 (MQ=255) cGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAata < 1:31323513/68‑1 (MQ=255) cGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAata > 1:23305191/1‑68 (MQ=255) gagaCTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAatat < 1:972541/68‑1 (MQ=255) gagaCTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAatat < 1:8566848/68‑1 (MQ=255) gagaCTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAatat < 1:13546823/68‑1 (MQ=255) gagaCTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAatat < 1:5220508/68‑1 (MQ=255) agaCTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAatata > 1:7618560/1‑68 (MQ=255) aCTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATAtt > 1:17718805/1‑68 (MQ=255) aCTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATAtt > 1:11262208/1‑68 (MQ=255) aCTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATAtt > 1:9109042/1‑68 (MQ=255) aCTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATAtt > 1:16484067/1‑68 (MQ=255) aCTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATAtt > 1:5478540/1‑68 (MQ=255) aCTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATAtt > 1:4168747/1‑68 (MQ=255) aCTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATAtt > 1:24623960/1‑68 (MQ=255) tgatgaCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGa < 1:18682585/68‑1 (MQ=255) gaCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTg > 1:32353880/1‑68 (MQ=255) aaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCaa > 1:28838591/1‑68 (MQ=255) cGCAAAACTGCCTGATGCGCTACGCTTTTCAGGCCTACATGGTCCTGCAAAATATTGAATTGGCAAGa < 1:30684890/68‑1 (MQ=18) aaaCTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGAtttt < 1:22172340/68‑1 (MQ=255) aCTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTg > 1:30018676/1‑68 (MQ=255) cctgataagcgtagcgcATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAg < 1:2184090‑M1/50‑1 (MQ=255) gATGCGCTACGCTTATCAGGCATACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCg < 1:22852085/68‑1 (MQ=255) tGCGCTAGGCTTATCAGGCCTACATGGTCGTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGa < 1:6173614/68‑1 (MQ=255) tGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCgg < 1:21384490/67‑1 (MQ=255) tGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGa < 1:15998659/68‑1 (MQ=255) gcgcTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGAt > 1:33678701/1‑68 (MQ=255) tACGCTTATCAGGCCTACATGGTCCTGCAAAATATTGAAATGGCAAGATTTTTGTAGGCCGGATAAgg < 1:26147713/68‑1 (MQ=21) cGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCg < 1:19300808/68‑1 (MQ=255) gCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGt > 1:15721055/1‑68 (MQ=255) gCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGt > 1:7359090/1‑68 (MQ=255) gCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGt > 1:11571390/1‑68 (MQ=255) tATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTc > 1:33241386/1‑67 (MQ=255) | CGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGGTCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTC > CP009273/605524‑605656 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |