| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 605591 = | NA (NA) | 7 (0.020) | 5/98 | NT | NA | noncoding (19/98 nt) | RIP54 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP54 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 2648336 = | NA (NA) | noncoding (8/97 nt) | RIP183 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP183 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 417 total aligned reads displayed.
AAGTTCGTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAGGCCGGATA > CP009273/2648269‑2648403 | aGTTCGTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATgc > 1:3299784/1‑68 (MQ=255) aGTTCGTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATgc > 1:23175644/1‑68 (MQ=255) aGTTCGTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATgc < 1:32872095/68‑1 (MQ=255) aGTTCGTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATgc < 1:4452187/68‑1 (MQ=255) aGTTCGTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATgc > 1:190296/1‑68 (MQ=255) aGTTCGTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATgc < 1:8416392/68‑1 (MQ=255) aGTTCGTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATgc < 1:29070543/68‑1 (MQ=255) aGTTCGTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATgc < 1:18792237/68‑1 (MQ=255) aGTTCGTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATgc > 1:24477083/1‑68 (MQ=255) tCGTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGTGGCGCAAATGCCTGATgcg < 1:5706488/66‑1 (MQ=255) gTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTAc < 1:3976368/68‑1 (MQ=255) gTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTAc < 1:25410429/68‑1 (MQ=255) gTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTAc < 1:14449328/68‑1 (MQ=255) gTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTAc < 1:17260288/68‑1 (MQ=255) gTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTAc < 1:28580853/68‑1 (MQ=255) gTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTAc < 1:8250655/68‑1 (MQ=255) gTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTAc < 1:34531432/68‑1 (MQ=255) gTTTTTTGTAGCGGACATAAGAACGACATTTCATTCAACTTTCGGGGCGCTAATGCCTGATGCTCTAc < 1:21634357/68‑1 (MQ=255) tttttGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACg < 1:15836879/67‑1 (MQ=255) ttGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTa < 1:10630376/68‑1 (MQ=255) ttGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTa < 1:1546379/68‑1 (MQ=255) ttGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTa < 1:25284917/68‑1 (MQ=255) tGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTa > 1:6847518/1‑67 (MQ=255) cggcctacaaaaatcttgccaattcaatatattgcaggaccatgtaggcctgatGGGGTACGCTTATc > 1:13327918‑M2/55‑68 (MQ=255) tCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAgg < 1:13867359/68‑1 (MQ=255) tCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAgg < 1:8053136/68‑1 (MQ=255) tCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAgg < 1:14259531/68‑1 (MQ=255) tCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAgg < 1:27508708/68‑1 (MQ=255) tCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAgg < 1:15177097/68‑1 (MQ=255) tCGGACATAACAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAgg < 1:20126320/68‑1 (MQ=255) cGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGc < 1:29232122/68‑1 (MQ=255) cGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGc < 1:24255559/68‑1 (MQ=255) cGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGc < 1:3031331/68‑1 (MQ=255) cGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGc < 1:6015763/68‑1 (MQ=255) aCATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCt < 1:26946386/67‑1 (MQ=255) aCATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCt < 1:23022441/67‑1 (MQ=255) aCATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCt < 1:9238463/67‑1 (MQ=255) aCATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCt < 1:10899621/67‑1 (MQ=255) aCATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCt < 1:12304245/67‑1 (MQ=255) aCATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCt > 1:16228649/1‑67 (MQ=255) aCATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCt > 1:5930565/1‑67 (MQ=255) aCATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCt < 1:17417882/67‑1 (MQ=255) cATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTa < 1:1707903/67‑1 (MQ=255) gAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAggg > 1:29995873/1‑68 (MQ=255) gAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAggg > 1:30115560/1‑68 (MQ=255) gAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAggg > 1:30768880/1‑68 (MQ=255) gAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAggg > 1:23662510/1‑68 (MQ=255) aCCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTGCAAGGGAt > 1:2788867/1‑68 (MQ=255) aCCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGa < 1:28451262/67‑1 (MQ=255) aCCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGa < 1:7211883/67‑1 (MQ=255) aCCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGAt > 1:11368748/1‑68 (MQ=255) aCCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGAt > 1:28968128/1‑68 (MQ=255) aCCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGAt > 1:17758108/1‑68 (MQ=255) cacaATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTc > 1:10113661/1‑68 (MQ=255) ttcattcaACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAAt > 1:32334783/1‑68 (MQ=255) tcattcaACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAAtt > 1:13191615/1‑68 (MQ=255) tcattcaACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAAtt > 1:29718027/1‑68 (MQ=255) tcattcaACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAAtt > 1:20408926/1‑68 (MQ=255) tcattcaACGTTAGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAAtt > 1:34181844/1‑68 (MQ=255) cattcaACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAAttt < 1:11525993/68‑1 (MQ=255) ttcaACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATttgt > 1:22633863/1‑68 (MQ=255) tcaACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATttgtt > 1:31645153/1‑68 (MQ=255) caACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATttgttg > 1:33296703/1‑68 (MQ=255) aCGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGaa > 1:19664100/1‑68 (MQ=255) aCGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGaa > 1:33791949/1‑68 (MQ=255) cGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCTATTTGTTGAAt > 1:24861453/1‑68 (MQ=255) cGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAAt > 1:5071193/1‑68 (MQ=255) cGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAAt > 1:21914269/1‑68 (MQ=255) gTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCTATTTGTTGAAtt > 1:25720101/1‑68 (MQ=255) gTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAAtt < 1:8967601/68‑1 (MQ=255) gTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAAtt > 1:477154/1‑68 (MQ=255) gTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAAtt > 1:26699899/1‑68 (MQ=255) gTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAAtt > 1:3130267/1‑68 (MQ=255) gggCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAg > 1:14664650/1‑68 (MQ=255) ggCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAg < 1:12397476/67‑1 (MQ=255) ggCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAg < 1:7719159/67‑1 (MQ=255) ggCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGa > 1:18261324/1‑68 (MQ=255) gcgcAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGaa > 1:1178599/1‑68 (MQ=255) cgcAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGaa < 1:6611641/67‑1 (MQ=255) gcAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAAtt < 1:31822829/68‑1 (MQ=255) gcAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAAtt < 1:10327030/68‑1 (MQ=255) gcAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAAtt < 1:6439636/68‑1 (MQ=255) gcAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAAtt < 1:16420031/68‑1 (MQ=255) gcAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAAtt < 1:5300843/68‑1 (MQ=255) gcAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAAtt < 1:3769819/68‑1 (MQ=255) aaaTGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAAttt < 1:15727592/67‑1 (MQ=255) tGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAg > 1:12049162/1‑68 (MQ=255) tgatGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAGGCCg < 1:6957635‑M2/64‑1 (MQ=255) tgatGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAGGCCg < 1:7876386‑M2/64‑1 (MQ=255) gatGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAGGCCgg < 1:23893061‑M2/65‑1 (MQ=255) tGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGATTTTGCAGAATTTGTAGGCCGGAt > 1:7482587‑M2/2‑68 (MQ=255) tGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAGGCCGGa < 1:8628758‑M2/66‑1 (MQ=255) tGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAGGCCGGAt > 1:15978643‑M2/2‑68 (MQ=255) tGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAGGCCGGAt > 1:26085013‑M2/2‑68 (MQ=255) tGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAGGCCGGAt > 1:8135647‑M2/2‑68 (MQ=255) tGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAGGCCGGAt > 1:12804197‑M2/2‑68 (MQ=255) tGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAGGCCGGAt > 1:7656419‑M2/2‑68 (MQ=255) tGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAGGCCGGAt > 1:21387912‑M2/2‑68 (MQ=255) tGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAGGCCGGAt > 1:21213738‑M2/2‑68 (MQ=255) gcgcTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAGGCCGGATa > 1:33630094/1‑68 (MQ=255) | AAGTTCGTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAGGCCGGATA > CP009273/2648269‑2648403 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |