| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1092557 | NA (NA) | 22 (0.060) | 9/96 | NT | NA | intergenic (+272/+464) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | CP009273 | = 1092561 | NA (NA) | intergenic (+276/+460) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
Only 100 of 427 total aligned reads displayed.
GCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCAATACACGAAAAAA > CP009273/1092507‑1092623 | gctcgcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAc < 1:23412621/68‑1 (MQ=31)gctcgcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAc < 1:32364069/68‑1 (MQ=31)gcgcgcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAc < 1:11323669/65‑1 (MQ=14) ctcgcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAc > 1:13168296/1‑67 (MQ=31) tcgcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAcc < 1:1102214/67‑1 (MQ=33) cccTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCg > 1:17435690/1‑68 (MQ=35) ccggCGGGCAGCCCGCTCACTGCGGTCACGGTCTGTCCCACTGGCGGTCGCCAGTTGTCGACCCCCgg < 1:148465/65‑1 (MQ=11) ccTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGCCCCCCgg > 1:17778308/1‑68 (MQ=25) cTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGt < 1:12665484/68‑1 (MQ=35) tGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTc > 1:23996227/1‑68 (MQ=35) cGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCgg > 1:30685400/1‑68 (MQ=35) gggCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCggg < 1:30921390/68‑1 (MQ=35) gggCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCggg > 1:16764777/1‑68 (MQ=35) gggCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCggg < 1:19530600/68‑1 (MQ=35) gggCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCggg < 1:32159398/68‑1 (MQ=35) gggCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCggg < 1:26991311/68‑1 (MQ=35) ggCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGCCCCCCGGTCggg > 1:7849764/1‑67 (MQ=25) ggCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCggg > 1:32695659/1‑67 (MQ=35) ggCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCggg > 1:8146119/1‑67 (MQ=35) aGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCt < 1:28935778/67‑1 (MQ=35) gCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCt > 1:29875344/1‑66 (MQ=35) ccGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGcgtg > 1:10918893/1‑63 (MQ=25) cTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAt > 1:6725982/1‑67 (MQ=35) cTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAt > 1:34379722/1‑67 (MQ=35) tCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑c > 1:19713466/1‑67 (MQ=35) tCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑c < 1:29478679/67‑1 (MQ=35) tCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑c > 1:13999484/1‑67 (MQ=35) tCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑c < 1:16166853/67‑1 (MQ=35) cACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑ccc < 1:22785066/68‑1 (MQ=35) cACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑ccc < 1:28305805/68‑1 (MQ=35) cACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑ccc < 1:31107999/68‑1 (MQ=35) cACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑ccc < 1:31971141/68‑1 (MQ=35) cACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑ccc < 1:26094432/68‑1 (MQ=35) cACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑ccc < 1:25336363/68‑1 (MQ=35) cACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑ccc < 1:15119737/68‑1 (MQ=35) cACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑ccc < 1:23182823/68‑1 (MQ=35) cACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑ccc < 1:2254567/68‑1 (MQ=35) cACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑ccc < 1:21045265/68‑1 (MQ=35) cACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑ccc < 1:3870255/68‑1 (MQ=35) cACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑ccc < 1:10518532/68‑1 (MQ=35) cACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑ccc < 1:33992890/68‑1 (MQ=35) cACGGCGTGCACGGGCTGTCCACCTGGCTGTCGCCATTTGTCGACCCCCGGTCGGGGCTTCTCAT‑ccc < 1:1428814/68‑1 (MQ=11) cTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑cccc > 1:20507140/1‑67 (MQ=35) tGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑cccccc > 1:9117940/1‑68 (MQ=35) tGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑cccccc > 1:21912375/1‑68 (MQ=35) gTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CGCCCCgg < 1:4199345/67‑1 (MQ=25) gTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCgg < 1:17113937/67‑1 (MQ=35) gTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCgg < 1:1449000/67‑1 (MQ=35) gTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCgg < 1:11969248/67‑1 (MQ=35) gTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCgg < 1:24930862/67‑1 (MQ=35) gTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCgg < 1:25450769/67‑1 (MQ=35) gTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCgg < 1:31288546/67‑1 (MQ=35) gTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCgg < 1:29984982/67‑1 (MQ=35) gTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgt < 1:21623610/68‑1 (MQ=35) taaCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgt < 1:3508508/66‑1 (MQ=25) tCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgt < 1:5502813/68‑1 (MQ=35) tCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgt < 1:4109230/68‑1 (MQ=35) tCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgt < 1:6965398/68‑1 (MQ=35) tCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgt < 1:33392789/68‑1 (MQ=35) tCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtg < 1:15366498/67‑1 (MQ=35) tCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtg < 1:5867058/67‑1 (MQ=35) cACGGTCTGTCCATCTGCCTGTCGGCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑‑CCCCCGgtgtgt < 1:612832/68‑1 (MQ=11) cACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGgtgt < 1:27470756/68‑1 (MQ=255) cACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgtg > 1:10261592/1‑68 (MQ=35) cACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgtg > 1:489923/1‑68 (MQ=35) actgTCTGTCCAACTGGCTGTCGCCATTTGTCGCCCCCCGGACGGGGCTTCTCAT‑CCCCCCGgtgtgt < 1:27117841/65‑1 (MQ=11) aCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgtgt < 1:22311515/68‑1 (MQ=35) aCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgtgt < 1:18126523/68‑1 (MQ=35) aCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgtgt < 1:1980450/68‑1 (MQ=35) aCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgtgt < 1:20261692/68‑1 (MQ=35) aCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgtgt < 1:33654389/68‑1 (MQ=35) aCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgtgt < 1:7219347/68‑1 (MQ=35) aCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgtgt < 1:9709157/68‑1 (MQ=35) aCGGTCTGTCCAACTGGCGGTCGCCAGTTGGCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgtgt < 1:8767274/68‑1 (MQ=255) cGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgtgt > 1:12866979/1‑67 (MQ=35) cGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCACGCtctgtg > 1:10107117/1‑68 (MQ=11) ggTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGc > 1:20756252/1‑68 (MQ=35) gTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGGGTCTCAT‑CCCCCCGGGGTGGGCa > 1:13501402/1‑68 (MQ=11) gTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCa > 1:32974659/1‑68 (MQ=35) gTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCa > 1:9415582/1‑68 (MQ=35) gTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCa > 1:27879267/1‑68 (MQ=35) gTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCa > 1:28455277/1‑68 (MQ=35) gTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CACCCCGGTGTGTGCa > 1:8089625/1‑68 (MQ=25) tCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCaa > 1:18701212/1‑68 (MQ=35) tCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCaa > 1:26782810/1‑68 (MQ=35) tCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCaa > 1:27337090/1‑68 (MQ=35) tCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGGGTGCaa > 1:18306521/1‑68 (MQ=255) tCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGCCTTCACCT‑CCCCCCGGTGTGTGCaa > 1:13701055/1‑68 (MQ=11) cTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCAAt < 1:4653634/68‑1 (MQ=35) cTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCAAt < 1:30217568/68‑1 (MQ=35) ccAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCAATagac > 1:7484185/1‑68 (MQ=25) aCTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCAATACACGaa < 1:28652678/68‑1 (MQ=40) aCTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCAATACACGaa > 1:19257467/1‑68 (MQ=40) aCTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCAATACACGaa > 1:23860903/1‑68 (MQ=40) aCTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCAATAAACGaa > 1:15925187/1‑68 (MQ=25) tGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCa > 1:12521639/1‑57 (MQ=35) tGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCAATACACGaaaa > 1:15554338/1‑68 (MQ=40) tGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGGGGAATACACGataa > 1:11669929/1‑68 (MQ=14) tGGCTGTCGCCAGTTGTCGACCCCAGGACGGGGCTTCTCCT‑GCACCCGGTGTGTGCAATACACGaaaa < 1:21400229/68‑1 (MQ=14) gCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgtgt < 1:24236148/52‑1 (MQ=35) | GCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCAATACACGAAAAAA > CP009273/1092507‑1092623 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |