| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1092557 | NA (NA) | 22 (0.060) | 9/96 | NT | NA | intergenic (+272/+464) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | CP009273 | = 1092561 | NA (NA) | intergenic (+276/+460) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
Only 100 of 434 total aligned reads displayed.
GCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCAATACACGAAAAAAAAGC > CP009273/1092507‑1092627 | gcgcgcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAc < 1:11323669/65‑1 (MQ=14) ctcgcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAc > 1:13168296/1‑67 (MQ=31) tcgcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAcc < 1:1102214/67‑1 (MQ=33) tcgcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAcc < 1:8392270/67‑1 (MQ=33) gcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAccccc < 1:23985439/68‑1 (MQ=35) cccTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCg > 1:17435690/1‑68 (MQ=35) ccggCGGGCAGCCCGCTCACTGCGGTCACGGTCTGTCCCACTGGCGGTCGCCAGTTGTCGACCCCCgg < 1:148465/65‑1 (MQ=11) ccTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAcc < 1:21031316/63‑1 (MQ=33) ccTGCGGGCAGCCCGCTCACTGCGTTCACGGGCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCg < 1:12023580/67‑1 (MQ=25) cTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCgg > 1:34278489/1‑67 (MQ=35) gggCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCggg < 1:17763964/68‑1 (MQ=35) gggCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCggg < 1:7547018/68‑1 (MQ=35) gggCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCggg < 1:26991311/68‑1 (MQ=35) gggCAGCCCGCTCACGGCGTTCACGGTCTGGCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCggg < 1:20336886/68‑1 (MQ=255) ggCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGCCCCCCGGTCggg > 1:7849764/1‑67 (MQ=25) ggCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCggg > 1:32695659/1‑67 (MQ=35) ggCAGCCCGCTCACGGGGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCggg > 1:32327877/1‑67 (MQ=255) cAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGc < 1:19796850/67‑1 (MQ=35) aGCCCGCTCACTGCGTTCACGGTCGGGCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCt < 1:2210939/67‑1 (MQ=255) ccGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTtctc > 1:31053714/1‑68 (MQ=35) ccGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTtc < 1:20164272/66‑1 (MQ=35) cTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAt > 1:6725982/1‑67 (MQ=35) tCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑c > 1:13999484/1‑67 (MQ=35) cACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑ccc < 1:21812482/68‑1 (MQ=35) cACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑ccc < 1:32884402/68‑1 (MQ=35) cACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑ccc < 1:3870255/68‑1 (MQ=35) cACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑ccc < 1:24836969/68‑1 (MQ=35) cACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑ccc < 1:25336363/68‑1 (MQ=35) cACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑ccc < 1:29453147/68‑1 (MQ=35) cACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑ccc < 1:10518532/68‑1 (MQ=35) cACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑ccc < 1:15996339/68‑1 (MQ=35) cACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑ccc < 1:116927/68‑1 (MQ=35) cACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑cc > 1:18689849/1‑67 (MQ=35) cACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑cc > 1:23039992/1‑67 (MQ=35) cACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑cc > 1:23793704/1‑67 (MQ=35) cACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑cc > 1:21521545/1‑67 (MQ=35) cACTGCGTTCACGGGCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑ccc < 1:30599328/68‑1 (MQ=255) cACGGCGTGCACGGGCTGTCCACCTGGCTGTCGCCATTTGTCGACCCCCGGTCGGGGCTTCTCAT‑ccc < 1:1428814/68‑1 (MQ=11) tGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑cccccc > 1:9117940/1‑68 (MQ=35) tGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑cccccc > 1:25752435/1‑68 (MQ=35) gTTCACTGTCTCCCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgt < 1:2250842/68‑1 (MQ=11) gTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CGCCCCgg < 1:4199345/67‑1 (MQ=25) gTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCgg < 1:25450769/67‑1 (MQ=35) gTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCgg < 1:29984982/67‑1 (MQ=35) gTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCgg < 1:28383517/67‑1 (MQ=35) gTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCgg < 1:1449000/67‑1 (MQ=35) gTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCgg < 1:17113937/67‑1 (MQ=35) gTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgt < 1:19477422/68‑1 (MQ=35) taaCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgt < 1:3508508/66‑1 (MQ=25) tCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgt < 1:6965398/68‑1 (MQ=35) tCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgt < 1:8916060/68‑1 (MQ=35) tCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgt < 1:33250349/68‑1 (MQ=35) tCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgt < 1:5502813/68‑1 (MQ=35) tCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgt < 1:10919333/68‑1 (MQ=35) tCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtg < 1:15366498/67‑1 (MQ=35) tCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtg < 1:5867058/67‑1 (MQ=35) tCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtg < 1:3091677/67‑1 (MQ=35) cACGGTCTGTCCATCTGCCTGTCGGCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑‑CCCCCGgtgtgt < 1:612832/68‑1 (MQ=11) cACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGgtgt < 1:27470756/68‑1 (MQ=255) cACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgtg > 1:489923/1‑68 (MQ=35) cACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgtg > 1:10261592/1‑68 (MQ=35) cACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgtg > 1:12938992/1‑68 (MQ=35) actgTCTGTCCAACTGGCTGTCGCCATTTGTCGCCCCCCGGACGGGGCTTCTCAT‑CCCCCCGgtgtgt < 1:27117841/65‑1 (MQ=11) actgTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgtgt < 1:31681584/65‑1 (MQ=25) aCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgtgt < 1:29133559/68‑1 (MQ=35) aCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgtgt < 1:9709157/68‑1 (MQ=35) aCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgtgt < 1:7219347/68‑1 (MQ=35) aCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgtgt < 1:15153965/68‑1 (MQ=35) aCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgtgt < 1:18126523/68‑1 (MQ=35) aCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgtgt < 1:20671118/68‑1 (MQ=35) aCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgtgt < 1:33989935/68‑1 (MQ=35) aCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgtgt < 1:33654389/68‑1 (MQ=35) aCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgtgt < 1:21306382/68‑1 (MQ=35) cGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCACGCtctgtg > 1:10107117/1‑68 (MQ=11) gTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGGGTCTCAT‑CCCCCCGGGGTGGGCa > 1:13501402/1‑68 (MQ=11) gTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCa > 1:28455277/1‑68 (MQ=35) gTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCa > 1:9415582/1‑68 (MQ=35) gTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCa > 1:31259259/1‑68 (MQ=35) gTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCa > 1:19624663/1‑68 (MQ=35) gTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCa > 1:27879267/1‑68 (MQ=35) gTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CACCCCGGTGTGTGCa > 1:8089625/1‑68 (MQ=25) tCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCaa > 1:26782810/1‑68 (MQ=35) tCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCaa > 1:27337090/1‑68 (MQ=35) tCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGGGTGCaa > 1:18306521/1‑68 (MQ=255) tCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGCCTTCACCT‑CCCCCCGGTGTGTGCaa > 1:13701055/1‑68 (MQ=11) cTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCAAt < 1:4653634/68‑1 (MQ=35) cTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCAAt < 1:30217568/68‑1 (MQ=35) cTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCAAt < 1:32139933/68‑1 (MQ=35) tCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCAATaa > 1:12683668/1‑66 (MQ=25) cAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCAATAGACg > 1:19049640/1‑68 (MQ=25) cAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCAATACACg < 1:298307/68‑1 (MQ=40) aCTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCAATACACGaa < 1:28652678/68‑1 (MQ=40) tGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCa > 1:12521639/1‑57 (MQ=35) tGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCAATACACGaaaa < 1:16603673/68‑1 (MQ=40) tGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCAATACACGaaaa > 1:15554338/1‑68 (MQ=40) tGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCAATACACGaaaa > 1:408536/1‑68 (MQ=40) tGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGGGTGCAATATACGaaaa > 1:22722009/1‑68 (MQ=255) tGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGGGTGCAATAAACGaaaa > 1:23403733/1‑68 (MQ=255) gCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGgtgtgt < 1:24236148/52‑1 (MQ=35) gccGCCATTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCGGGTGTGTGCAATACACGAAAAAAAAg < 1:1619015/66‑1 (MQ=14) | GCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAT‑CCCCCCGGTGTGTGCAATACACGAAAAAAAAGC > CP009273/1092507‑1092627 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |